PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019126m
Common NameEUTSA_v10019126mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family YABBY
Protein Properties Length: 215aa    MW: 23473.8 Da    PI: 10.2733
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019126mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY139.44e-43481904163
            YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnve.keesastsv 96 
                       s++e++ yv+C+ Cntilav +P + ++ +vtv+CGhC +l  ++ +      + + h        +  +l+++  ++   +e k+ s+s+s 
  Thhalv10019126m  48 SSQAEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTSP-----PLQGH--------VSLTLQMQ--SFGGSHEyKKGSSSSSS 126
                      5789************************************975533332.....22232........33333333..33333220333333333 PP

            YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                      ss   +++++  +pr+p v++PPek+qr Psaynrf+++eiqrik++nP+i hreafsaaaknWa +
  Thhalv10019126m 127 SS---TSSDQPPSPRPPFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 190
                      33...3457788999999***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.8E-5050190IPR006780YABBY protein
SuperFamilySSF470951.7E-8134189IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.5E-5144189IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MWASQGLLAS NLNELHYSNS LSLNKRVLIH SIKIMNLEEK PTMASRASSQ AEHLYYVRCS  60
ICNTILAVGI PLKRMLDTVT VKCGHCGNLS FLTTSPPLQG HVSLTLQMQS FGGSHEYKKG  120
SSSSSSSSTS SDQPPSPRPP FVVKPPEKKQ RLPSAYNRFM RDEIQRIKSA NPEIPHREAF  180
SAAAKNWAKY IPNSPTSITS GGNNINGLGF GEKK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019126m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1190550.0DQ119055.1 Brassica juncea transcription factor CRC mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007404.11e-132protein CRABS CLAW
SwissprotQ8L9251e-106CRC_ARATH; Protein CRABS CLAW
TrEMBLV4KB501e-157V4KB50_EUTSA; Uncharacterized protein
STRINGXP_006391053.11e-158(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97252835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-108YABBY family protein
Publications ? help Back to Top
  1. Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
    The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
    Ann. Bot., 2014. 114(7): p. 1535-44
    [PMID:24989787]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  3. Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
    Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
    Nat Commun, 2017. 8(1): p. 1125
    [PMID:29066759]
  4. Yamaguchi N, et al.
    Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
    Nat Commun, 2018. 9(1): p. 5290
    [PMID:30538233]