PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019367m
Common NameEUTSA_v10019367mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 98aa    MW: 11138.5 Da    PI: 9.8933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019367mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-071154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    + + +a + + ++   +W+ +a+ +g g++++++k ++
  Thhalv10019367m 11 SWTFKQNKMFERALAVYDKDtpdRWHNVANAVG-GKSAEEVKRHY 54
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.144458IPR017877Myb-like domain
SMARTSM007172.7E-6860IPR001005SANT/Myb domain
SuperFamilySSF466891.47E-121065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-41160IPR009057Homeodomain-like
CDDcd001671.11E-51254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASNSRSSSS SWTFKQNKMF ERALAVYDKD TPDRWHNVAN AVGGKSAEEV KRHYDILVED  60
LISIETGRVP LPNYKTFESN SRAINDFNTR LMKNLKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-33197192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019367m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894931e-109AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390328.13e-67protein RADIALIS-like 6
SwissprotQ1A1736e-61RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLV4K9A77e-66V4K9A7_EUTSA; Uncharacterized protein
STRINGXP_006390328.11e-66(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-57RAD-like 6