PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019474m
Common NameEUTSA_v10019474mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 259aa    MW: 29160.9 Da    PI: 8.629
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019474mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51e-20131180255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      g++GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+ +l+g
  Thhalv10019474m 131 GFRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAAMRLRG 180
                      79*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-30131194IPR001471AP2/ERF domain
PROSITE profilePS5103222.721131188IPR001471AP2/ERF domain
PfamPF008471.1E-14131180IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-21131188IPR016177DNA-binding domain
PRINTSPR003673.2E-10132143IPR001471AP2/ERF domain
CDDcd000181.05E-17132190No hitNo description
Gene3DG3DSA:3.30.730.103.5E-28132188IPR001471AP2/ERF domain
PRINTSPR003673.2E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MENTVDGHRL QPSVPLSSLV EIHQSFETYE LYKETPFVCM PFFGPKTPFT NHLTVTEPFN  60
VGPESFDISS LFSPPDSKPE PARVMDDSIA AVVGEDVLFG NNNKATDDHF TATETEDGVK  120
RWRKMAQKNG GFRGVRKRPW GRWSAEIRDR IGRCRHWLGT FDTAEEAARA YDAAAMRLRG  180
TKAKTNFAVA PVFPEEIAQS GEDIRRRRKK KKRVNVSKCV KVTSVAQLFS DTNTLTSSTC  240
HYGNVISPFH DLDLNFWV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17123187671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204212RRRRKKKKR
2206212RRKKKKR
3207212RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019474m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0188482e-74AC018848.6 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence.
GenBankAC0188492e-74AC018849.2 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence.
GenBankAY5608442e-74AY560844.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g80580) mRNA, complete cds.
GenBankBT0260382e-74BT026038.1 Arabidopsis thaliana At1g80580 mRNA, complete cds.
GenBankCP0026842e-74CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464462e-74DQ446446.1 Arabidopsis thaliana clone pENTR221-At1g80580 ethylene-responsive element-binding family protein (At1g80580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006389813.10.0ethylene-responsive transcription factor ERF084
SwissprotQ9M8M55e-81ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLV4K7Y50.0V4K7Y5_EUTSA; Uncharacterized protein
STRINGXP_006389813.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-79ERF family protein