PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019494m
Common NameEUTSA_v10019494mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 238aa    MW: 25686.9 Da    PI: 7.4431
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019494mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260941.7e-294104196
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC+++p++     +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++  +q
  Thhalv10019494m   4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQ 97 
                      6*********************9999767889************************************************************** PP

           DUF260  90 lkaelal 96 
                      +++e +l
  Thhalv10019494m  98 AAVESVL 104
                      *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9073109IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH  60
LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV ESVLNGLPIT HTPLPSASAS  120
HQIIPPHRTY DIRHVVKDPT TGGDSSESLS LAPRVNGNKT KTQTGRFKRI AETVSYQTGE  180
CSHDAWQLGS SGATHGYGQL ALENVESPRE APLNQSSNLG FDDQVDTNEV GLELRLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019494m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391131.11e-178LOB domain-containing protein 42
SwissprotQ9CA301e-153LBD42_ARATH; LOB domain-containing protein 42
TrEMBLV4KF161e-176V4KF16_EUTSA; Uncharacterized protein
STRINGXP_006391131.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-156LOB domain-containing protein 42