PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019510m
Common NameEUTSA_v10019510mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 149aa    MW: 16525.2 Da    PI: 6.0133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019510mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-161463255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l+ 
  Thhalv10019510m 14 KYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSTAEGAAVAHDVAFYCLHR 63
                     8*****998.**********943...5*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5471475IPR001471AP2/ERF domain
SMARTSM003802.1E-271481IPR001471AP2/ERF domain
PfamPF008475.5E-81461IPR001471AP2/ERF domain
CDDcd000183.45E-231477No hitNo description
Gene3DG3DSA:3.30.730.104.9E-241476IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-161475IPR016177DNA-binding domain
PRINTSPR003675.1E-91526IPR001471AP2/ERF domain
PRINTSPR003675.1E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDSRDAGETH HQVKYKGIRR RKWGKWVSEI RVPGTRERLW LGSFSTAEGA AVAHDVAFYC  60
LHRPLSLEDE AFNFPHLLSP SLASNTSPKS IQKAASDAGM AVDAGFAVNN DGRSGGGEDR  120
SSTTYREEDR ERETMSISVY DYLDDDRV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019510m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866971e-37AY086697.1 Arabidopsis thaliana clone 26867 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390762.11e-107ethylene-responsive transcription factor ERF020
SwissprotQ9C9I83e-75ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLV4KLA31e-106V4KLA3_EUTSA; Uncharacterized protein
STRINGXP_006390762.11e-106(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-70ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]