PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019518m
Common NameEUTSA_v10019518mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 125aa    MW: 14198.3 Da    PI: 5.1616
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019518mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.29.3e-1122112285
                      EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                      +k+l+  dv+++g l lp++ +e++       +++++ +  ++++     +++ v+l  ++ks+r y+l++GW   vk ng +++D + +  +
  Thhalv10019518m  22 KKTLSDTDVSQQGKLNLPRQDFENFiipemagDIIQNLGNGVKVKVlIYEEEYIVTL--KRKSNRsYMLSAGWPALVKTNGFQTNDLIGLCWV 112
                      689999****************77777766664444455555555544557888888..5555555********************9876654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.43E-1318120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1319117IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.9E-521124IPR003340B3 DNA binding domain
CDDcd100173.19E-1321121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MAQDQELNLE LDLTPYDPRV IKKTLSDTDV SQQGKLNLPR QDFENFIIPE MAGDIIQNLG  60
NGVKVKVLIY EEEYIVTLKR KSNRSYMLSA GWPALVKTNG FQTNDLIGLC WVSSSSRFYL  120
QRII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019518m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006866.15e-53B3 domain-containing protein At1g10455
TrEMBLV4KC943e-86V4KC94_EUTSA; Uncharacterized protein
STRINGXP_006391438.15e-87(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1494634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.13e-11B3 family protein