PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019566m
Common NameEUTSA_v10019566mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family RAV
Protein Properties Length: 351aa    MW: 39352.6 Da    PI: 10.0772
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019566mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.81.3e-1364112155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa+ ++ a++k++g
  Thhalv10019566m  64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARSYDIAARKFRG 112
                      89****9888.8*********3.....5*************************98 PP
2B3101.93.6e-32184287195
                      EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k+ tpsdv+k++rlv+pk++ae+h           ++ ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++
  Thhalv10019566m 184 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpsplgplPLV-TKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFER 276
                      89*************************999988887666.4889*************************************************8 PP

                      -SSSEE..EEE CS
               B3  85 dgrsefelvvk 95 
                      +   +++l++ 
  Thhalv10019566m 277 STGPDRQLYID 287
                      76677777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.51E-2664122No hitNo description
SuperFamilySSF541713.01E-1764121IPR016177DNA-binding domain
PfamPF008473.8E-864112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2065121IPR001471AP2/ERF domain
SMARTSM003802.0E-3065126IPR001471AP2/ERF domain
PROSITE profilePS5103220.49565120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-39177293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-32182283IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-27183277No hitNo description
PfamPF023622.9E-29184288IPR003340B3 DNA binding domain
SMARTSM010193.1E-26184292IPR003340B3 DNA binding domain
PROSITE profilePS5086313.93184294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVSCCIDESS STSESFSTTT ATAAKFSAPP PPPLRLYRMG SGGSSVVLDS ENGVETESRK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEEAA RSYDIAARKF RGRDAVINFK  120
KSLSEDDNGE LAFLETHSKA EIVDMLRKHT FADELEQNNK RRFLSNGKRP LQNDTVSRNR  180
EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPSPLGPLP LVTKGVLINF EDVNGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD VVTFERSTGP DRQLYIDWKI RSGSSNNPVQ  300
VVVRLFGVDI FNVTNAKTND VVAACGGKRS RDVDMFALRC SKKQAIINVL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-6118129411120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019566m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391089.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotP822800.0RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLV4JST20.0V4JST2_EUTSA; Uncharacterized protein
STRINGXP_006391089.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.20.0related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]