PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019604m
Common NameEUTSA_v10019604mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 183aa    MW: 19547.7 Da    PI: 7.5084
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019604mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1414.3e-134079544
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                     ++ +rkq+NRe+ArrsR RK++ ++ L+  v+ L +eN +
  Thhalv10019604m 40 RKRKRKQSNRESARRSRMRKQKHMDDLTAQVAHLRKENGQ 79
                     5789**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-1736100IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.0E-1136114No hitNo description
PROSITE profilePS5021710.61138101IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-114091No hitNo description
PfamPF001709.6E-114080IPR004827Basic-leucine zipper domain
CDDcd147029.00E-214191No hitNo description
PROSITE patternPS0003604358IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNKTEMGSST SGNCSSISTT GLQNSGSESD LRQRDLIDER KRKRKQSNRE SARRSRMRKQ  60
KHMDDLTAQV AHLRKENGQI VAGIAVTTQH YVAIEAENSI LRAQLLELNH RLSSLNEIVD  120
FVESASSSAG GFGMETGQGG GGVIDCGGGG GFYDGVMNPL NLGFYNQPIM ASASTAGDVF  180
NC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944RKRKRK
23960RKRKRKQSNRESARRSRMRKQK
35259RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019604m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390310.11e-132bZIP transcription factor 44
SwissprotC0Z2L51e-109BZP44_ARATH; bZIP transcription factor 44
TrEMBLV4M8Y11e-131V4M8Y1_EUTSA; Uncharacterized protein
STRINGXP_006390310.11e-132(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-86basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]