PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10019755m

Common Name

EUTSA_v10019755mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

ARR-B

Protein Properties

Length: 871aa MW: 97512.1 Da PI: 4.4726

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10019755m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	41.4	3.2e-13	237	286	5	55
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +Wt+e +F+ a++ L G++ Pk+il +m+ +L l +v SHLQkY+ Thhalv10019755m 237 VWTQERQMKFLTAISIL-GEKDSRPKSILSIMNDADLNLRQVGSHLQKYKA 286 6**************.9999*************************85 PP
2	Response_reg	33.3	2.5e-12	23	129	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vlivd + + e l+++l++ +v ++ +++al ++++++ ++l++ emp++d + +l+ + +e +p i++ + + + a + l Thhalv10019755m 23 VLIVDNDTTSIEYLTSMLKQFSD-KVMSVNMASDALSMIEKQKdIGLVIANTEMPRIDSHSFLTALLHKE--IPLILIHPEINTKEASDLLTKS 113 8****************7777.88888888888888866555******************7766..9***************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 + +l Kp++++++ + Thhalv10019755m 114 THFCLKKPISESDIKN 129 ********999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	3.56E-12	19	150	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	7.6E-15	20	157	No hit	No description
PROSITE profile	PS50110	23.582	22	135	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.2E-9	23	129	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	3.38E-6	24	134	No hit	No description
SuperFamily	SSF46689	3.05E-9	234	287	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-14	237	288	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-12	237	286	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MTEKLTLNLA GNTTAEHISD ISVLIVDNDT TSIEYLTSML KQFSDKVMSV NMASDALSMI 60 EKQKDIGLVI ANTEMPRIDS HSFLTALLHK EIPLILIHPE INTKEASDLL TKSTHFCLKK 120 PISESDIKNL WQHVVPKESQ KLEKINISEQ QEKVVEKTML NQIESFRETI KRQRISQSSL 180 LGKQPFVKTF TTPKTYQKRK EKAIDEGNTK PVYPTEAENK REEGIKMGSN IGRRCNVWTQ 240 ERQMKFLTAI SILGEKDSRP KSILSIMNDA DLNLRQVGSH LQKYKAQVEL MNDSLSRNEW 300 RSTDKIFNYP SDYKYPFNAS NLAKNIVESN TKWYSLRKKE ASSSSIDQYS FKKSADKGKA 360 KMMPKFHLGG KLDLSKHSLF DNVLNKSPME FKYVPSATSN KPHVLSSTND VNNSVLSSDN 420 PPVLSGLPLS VDASNHSGLS NNLPVLFGLP SSVGASKHNG LGYDSPSVLS GLPSNVGVPN 480 HNGLSDNPSV LSGLPTSVGA SNTDAFQMGS SEICIAQSEP NPFQPSSSVL EIDWNQLDLD 540 PISTPDPYVP LADLCTIGES YFLPDLVFTM NPLETNMDQI GWIPSTDNIS DETNMNQMGW 600 TPSTENFSHP ETNMNQMDWI PTLENYVFPQ TDMNINVPET NTTHMGWVSS REGYVASENI 660 IPSEISNQMD RVSYGENHVL SQDIISHVGF ATGQTNYETP SQTNTDQMNW LFSEESFLLL 720 EDIPFLETIT AQTLETNMED TSLVPYVEDT DCPIEELISL DIDVNEMDID CWFGNYGSSE 780 ENIPLSTMYI GHDSAFNSLM DSTPHSTMEN NDQSLGMNLE STSQQHNMME PCRYQHMKTE 840 NPREAMEGGD HFDDDPECMS WIDEMINDNA *

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MTEKLTLNLA GNTTAEHISD ISVLIVDNDT TSIEYLTSML KQFSDKVMSV NMASDALSMI  60
EKQKDIGLVI ANTEMPRIDS HSFLTALLHK EIPLILIHPE INTKEASDLL TKSTHFCLKK  120
PISESDIKNL WQHVVPKESQ KLEKINISEQ QEKVVEKTML NQIESFRETI KRQRISQSSL  180
LGKQPFVKTF TTPKTYQKRK EKAIDEGNTK PVYPTEAENK REEGIKMGSN IGRRCNVWTQ  240
ERQMKFLTAI SILGEKDSRP KSILSIMNDA DLNLRQVGSH LQKYKAQVEL MNDSLSRNEW  300
RSTDKIFNYP SDYKYPFNAS NLAKNIVESN TKWYSLRKKE ASSSSIDQYS FKKSADKGKA  360
KMMPKFHLGG KLDLSKHSLF DNVLNKSPME FKYVPSATSN KPHVLSSTND VNNSVLSSDN  420
PPVLSGLPLS VDASNHSGLS NNLPVLFGLP SSVGASKHNG LGYDSPSVLS GLPSNVGVPN  480
HNGLSDNPSV LSGLPTSVGA SNTDAFQMGS SEICIAQSEP NPFQPSSSVL EIDWNQLDLD  540
PISTPDPYVP LADLCTIGES YFLPDLVFTM NPLETNMDQI GWIPSTDNIS DETNMNQMGW  600
TPSTENFSHP ETNMNQMDWI PTLENYVFPQ TDMNINVPET NTTHMGWVSS REGYVASENI  660
IPSEISNQMD RVSYGENHVL SQDIISHVGF ATGQTNYETP SQTNTDQMNW LFSEESFLLL  720
EDIPFLETIT AQTLETNMED TSLVPYVEDT DCPIEELISL DIDVNEMDID CWFGNYGSSE  780
ENIPLSTMYI GHDSAFNSLM DSTPHSTMEN NDQSLGMNLE STSQQHNMME PCRYQHMKTE  840
NPREAMEGGD HFDDDPECMS WIDEMINDNA *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10019755m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391170.1	0.0	putative two-component response regulator-like APRR6
TrEMBL	V4MB84	0.0	V4MB84_EUTSA; Uncharacterized protein
STRING	XP_006391170.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13685	14	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	0.0	pseudo-response regulator 6

Link Out ? help Back to Top
Phytozome	Thhalv10019755m
Entrez Gene	18008849