PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019759m
Common NameEUTSA_v10019759mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 330aa    MW: 37977.7 Da    PI: 7.9538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019759mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-17105150147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia++++ gR++k+c++rw++ 
  Thhalv10019759m 105 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 150
                      899*****************************.***********996 PP
2Myb_DNA-binding59.85.8e-19157200146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ 
  Thhalv10019759m 157 RKAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 200
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.269100151IPR017930Myb domain
SuperFamilySSF466895.24E-29103198IPR009057Homeodomain-like
SMARTSM007171.8E-14104153IPR001005SANT/Myb domain
PfamPF002491.7E-16105150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-26106158IPR009057Homeodomain-like
CDDcd001671.25E-12108149No hitNo description
PROSITE profilePS5129426.439152206IPR017930Myb domain
SMARTSM007172.3E-15156204IPR001005SANT/Myb domain
PfamPF002497.5E-16157199IPR001005SANT/Myb domain
CDDcd001671.57E-11159199No hitNo description
Gene3DG3DSA:1.10.10.601.3E-21159205IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEMVFADVAF PSITPRFPSS SSSSYSSSLT NSNIIVMSED HRRWMDHITS WEYFSLNINN  60
DQHHDQYYAS HKEEGIRNPN QSNCSKKETR DYGSCGNSSK ASVARGHWRP AEDAKLKELV  120
ALYGPQNWNL IAEKLQGRSG KSCRLRWFNQ LDPRINRKAF TEEEEERLMQ AHRLYGNKWA  180
MIARLFPGRT DNSVKNHWHV IMARKFREQS SVYRRRKTML PLNPPLNPNS QVFNVFDPTR  240
LALTHLVSND DQNQFMLPVP CFSGSDHGNE SPLMLGMFEN QMMVGDYVAR IQEATTFDFA  300
NQTGKCEMLE SMNEEKKPPF FDFLGLGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-331032065108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019759m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493080.0AF249308.1 Arabidopsis thaliana putative transcription factor (MYB105) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391000.20.0transcription factor MYB105
SwissprotQ9SEZ41e-178MY105_ARATH; Transcription factor MYB105
TrEMBLV4MAR50.0V4MAR5_EUTSA; Uncharacterized protein
STRINGXP_006391000.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-174myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]