PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019760m
Common NameEUTSA_v10019760mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family FAR1
Protein Properties Length: 493aa    MW: 57617.7 Da    PI: 9.3158
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019760mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.35.9e-144692290
             FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                     +++n ++++  +vCske +r+e + k   ++ +++ tr+gCka+++  ++k+g++++ +++ +HnH+l+
  Thhalv10019760m  4 EEKNATVVRLLYVCSKEEYRKEPTVK---NSYSQPITRCGCKAHMTCYLQKTGRYKIVSFDPNHNHDLV 69
                     46788899**********99998665...999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-11469IPR004330FAR1 DNA binding domain
PfamPF105519.7E-23191264IPR018289MULE transposase domain
PROSITE profilePS509669.705404451IPR007527Zinc finger, SWIM-type
PfamPF044347.4E-6425451IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-5426453IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
TTEEEKNATV VRLLYVCSKE EYRKEPTVKN SYSQPITRCG CKAHMTCYLQ KTGRYKIVSF  60
DPNHNHDLVK TPMKHLLKGN QTVSFAQKQH ADDAEMSGIS AKGTVEIMSR EVGGQGNLGF  120
MEKDYRNYIY RKRMEEMKKG DAGAVLEYLQ KRKEDNSSFF YAMQLDEDDM ITNIFWADDR  180
SISDYNLFGD VVNHHKQTVV FGAALLYDET IESFKWLFET FLGAISGKQP KTILTDQSAA  240
MAKAIMNVFL ETKHRLCVWH IYQNAAKKLS HVFHGAEQFA TDFGKCVYDH EEEEDWLLAW  300
NNMLKKHKLT KDKWLKNLFE VREKWAMEYG RHTFTADMVS TQRSESMNNI LKRYLKRSYD  360
LLSFFEHYER VLDNLSFTLF QKQYAVIGDY VAKKVSKSEM VYEYKVSYRG EARKHVIRYD  420
ATNQTIHCSC MKYSFSGILC RHALKVLDKK NVRRIPSNYI LNRWSKEAKA RSVSSYHSEQ  480
HNERVNQSIG KR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019760m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116657.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_009116658.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLV4KG790.0V4KG79_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006391556.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-93FAR1-related sequence 5