PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10019764m
Common NameEUTSA_v10019764mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 190aa    MW: 21428.5 Da    PI: 8.4503
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10019764mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.41.8e-36161151100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++r+kC+k+C lapyfp+++ k+f n+h+lFG sn++k+lk ++e+er++am+ l+ +A+ara dPv G+++++++l+++++  ++el
  Thhalv10019764m  16 ACAACKFQRKKCTKNCLLAPYFPQDRYKQFLNAHRLFGISNITKMLKGIQESERDIAMQNLILHANARALDPVGGVYKIMSDLRRRISYYETEL 109
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      +++++e
  Thhalv10019764m 110 NSIRQE 115
                      *99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575117No hitNo description
PROSITE profilePS5089124.86815116IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3416113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSLSKLHGGS SSSATACAAC KFQRKKCTKN CLLAPYFPQD RYKQFLNAHR LFGISNITKM  60
LKGIQESERD IAMQNLILHA NARALDPVGG VYKIMSDLRR RISYYETELN SIRQEVALYR  120
SLAHPQQMPM QSQSQELSFG CYSYGDLLEQ GEEYVNADGY ETSKVKLEKE VISNPDQFLS  180
QILMPSQVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-24101195114LOB family transfactor Ramosa2.1
5ly0_B2e-24101195114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10019764m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390606.11e-140LOB domain-containing protein 7
SwissprotQ9SSM93e-67LBD7_ARATH; LOB domain-containing protein 7
TrEMBLV4KDM21e-138V4KDM2_EUTSA; Uncharacterized protein
STRINGXP_006390606.11e-139(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.15e-58LOB domain-containing protein 7