PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020047m
Common NameEUTSA_v10020047mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CAMTA
Protein Properties Length: 862aa    MW: 97423.2 Da    PI: 7.6722
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020047mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.24e-50291462118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      l+e k+rwl+++ei+a+L n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg+ e +++yYah+e+n+tf
  Thhalv10020047m  29 LEEvKRRWLRPNEIHAVLSNPKYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDNTTF 122
                      566699**************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                       rrcywlL++++e+ivlvhy++++
  Thhalv10020047m 123 VRRCYWLLDKARENIVLVHYRDTQ 146
                      *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.65925151IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7728146IPR005559CG-1 DNA-binding domain
PfamPF038595.8E-4432144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.88E-14318404IPR014756Immunoglobulin E-set
PfamPF127961.5E-7506584IPR020683Ankyrin repeat-containing domain
CDDcd002046.11E-16512614No hitNo description
SuperFamilySSF484032.95E-17512625IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-17513619IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.706522626IPR020683Ankyrin repeat-containing domain
SMARTSM002483.4E-6555584IPR002110Ankyrin repeat
PROSITE profilePS5008811.728555587IPR002110Ankyrin repeat
SuperFamilySSF525406.64E-5697770IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.144704728IPR000048IQ motif, EF-hand binding site
PfamPF006120.22704720IPR000048IQ motif, EF-hand binding site
SMARTSM0001585719741IPR000048IQ motif, EF-hand binding site
SMARTSM000150.022742764IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.091743767IPR000048IQ motif, EF-hand binding site
PfamPF006120.016744764IPR000048IQ motif, EF-hand binding site
SMARTSM0001511820842IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.261821850IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MDGDGSGRLI GSEIHGFHTL QDLDVQTMLE EVKRRWLRPN EIHAVLSNPK YFTINVKPVN  60
LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH LKVGNEERIH VYYAHGEDNT  120
TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSNSPIS ITDHSSPNLV AAEDIDFSVD  180
NARYLVSNNS PVVRNHEIRL HDINTLDWDE LLVQTDVNNQ PAPILDDLSY FTEQLQSAAN  240
GSAEHVNVTV ADESLDALLN NGPQSRESFG RWMNSFVGDS NGSLEDPSFE AMVTLEQGPL  300
APQAAFHPHS NIPEQVFKIT EVAPAWAYSS EKTKVLVTGF LHDSYQHLGS SNLFCVCGDS  360
CVPAEYVQAG VYRCFIPPHS PGMANLYLSA DGHKPISQCF TFEHRSVPLP GKTVPEDDQE  420
SKWEEFELQV RLAHLLFTSS NKLNVLSSKI SPANLVDAKK LASKTSHLLN SWAYLIKSIQ  480
GNKVSLGQAK DHIFELTLKN RIKEWLMEKV LEGCNTLDYD SKGLGVIHLC AILGYTWSVQ  540
LFSLSGLSLD FRDKQGWTAL HWAAYYGREK MVAALLTAGA KPNLVTDSRK DNLGGCTAAD  600
LAQQNGFDGL AAYLAEKGLV AQFIDMKIAG NISGNLEAFK GEMSNRSALS DDDQNLKDAL  660
AAYRTAAEAA ARIQGAFREK ALKAARSSVI QFANREEEAK GILAAMKIQN AFRKYDTRRK  720
IEAAYRIQCR FQTWKMRREF LNMRRQAIRI QAAFRGLQAR RQYKKIVWSV GVLEKAIIRW  780
RQKRKGFRGL QVSQAEAEEG LQGEEEEDFY KTSQRQAEER LERSVVRVQA MFRSKKAQQD  840
YRRMKLTHEE TQLEYECLQD I*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020047m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100270.0AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406788.10.0calmodulin-binding transcription activator 6
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLV4NP000.0V4NP00_EUTSA; Uncharacterized protein
STRINGXP_006406788.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]