PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020070m
Common NameEUTSA_v10020047mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CAMTA
Protein Properties Length: 835aa    MW: 94542 Da    PI: 8.2086
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020070mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.23.8e-5021192118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      l+e k+rwl+++ei+a+L n + +++  ++ + p+sg++iL++rk++r+frkDG++wkkkkdg+tv+E+he+LKvg+ e +++yYah+e+n+tf
  Thhalv10020070m   2 LEEvKRRWLRPNEIHAVLSNPKYFTINVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDNTTF 95 
                      566699**************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                       rrcywlL++++e+ivlvhy++++
  Thhalv10020070m  96 VRRCYWLLDKARENIVLVHYRDTQ 119
                      *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.8951124IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-771119IPR005559CG-1 DNA-binding domain
PfamPF038595.6E-445117IPR005559CG-1 DNA-binding domain
SuperFamilySSF812965.6E-14291377IPR014756Immunoglobulin E-set
PfamPF127961.5E-7479557IPR020683Ankyrin repeat-containing domain
CDDcd002045.28E-16485587No hitNo description
SuperFamilySSF484032.8E-17485598IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-17486592IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.706495599IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.728528560IPR002110Ankyrin repeat
SMARTSM002483.4E-6528557IPR002110Ankyrin repeat
SuperFamilySSF525406.64E-5670743IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.144677701IPR000048IQ motif, EF-hand binding site
PfamPF006120.21677693IPR000048IQ motif, EF-hand binding site
SMARTSM0001585692714IPR000048IQ motif, EF-hand binding site
SMARTSM000150.022715737IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.091716740IPR000048IQ motif, EF-hand binding site
PfamPF006120.015717737IPR000048IQ motif, EF-hand binding site
SMARTSM0001511793815IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.261794823IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MLEEVKRRWL RPNEIHAVLS NPKYFTINVK PVNLPNSGRI ILFDRKMLRN FRKDGHNWKK  60
KKDGRTVKEA HEHLKVGNEE RIHVYYAHGE DNTTFVRRCY WLLDKARENI VLVHYRDTQE  120
AATTSGDSNS PISITDHSSP NLVAAEDIDF SVDNARYLVS NNSPVVRNHE IRLHDINTLD  180
WDELLVQTDV NNQPAPILDD LSYFTEQLQS AANGSAEHVN VTVADESLDA LLNNGPQSRE  240
SFGRWMNSFV GDSNGSLEDP SFEAMVTLEQ GPLAPQAAFH PHSNIPEQVF KITEVAPAWA  300
YSSEKTKVLV TGFLHDSYQH LGSSNLFCVC GDSCVPAEYV QAGVYRCFIP PHSPGMANLY  360
LSADGHKPIS QCFTFEHRSV PLPGKTVPED DQESKWEEFE LQVRLAHLLF TSSNKLNVLS  420
SKISPANLVD AKKLASKTSH LLNSWAYLIK SIQGNKVSLG QAKDHIFELT LKNRIKEWLM  480
EKVLEGCNTL DYDSKGLGVI HLCAILGYTW SVQLFSLSGL SLDFRDKQGW TALHWAAYYG  540
REKMVAALLT AGAKPNLVTD SRKDNLGGCT AADLAQQNGF DGLAAYLAEK GLVAQFIDMK  600
IAGNISGNLE AFKGEMSNRS ALSDDDQNLK DALAAYRTAA EAAARIQGAF REKALKAARS  660
SVIQFANREE EAKGILAAMK IQNAFRKYDT RRKIEAAYRI QCRFQTWKMR REFLNMRRQA  720
IRIQAAFRGL QARRQYKKIV WSVGVLEKAI IRWRQKRKGF RGLQVSQAEA EEGLQGEEEE  780
DFYKTSQRQA EERLERSVVR VQAMFRSKKA QQDYRRMKLT HEETQLEYEC LQDI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:12218065, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020070m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100270.0AY510027.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406788.10.0calmodulin-binding transcription activator 6
SwissprotQ9LSP80.0CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBLV4NP000.0V4NP00_EUTSA; Uncharacterized protein
STRINGXP_006406788.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]