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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Thhalv10020213m | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 672aa MW: 73073.6 Da PI: 5.4852 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 78.8 | 6.7e-25 | 236 | 285 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
kpr++W+ eLH++Fv av+qL G ekA+Pk+ilelm+v+gLt+e+v+SHLQ
Thhalv10020213m 236 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVPGLTRENVASHLQ 285
79*******************.***************************** PP
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| 2 | Response_reg | 76.1 | 1.3e-25 | 37 | 145 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92
vl+vdD+p+ +++l+++l+ y ev+ + +e al ll++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ +l+ +
Thhalv10020213m 37 VLVVDDDPTCLMILERMLRTCLY-EVTKCNRAEMALSLLRKNKhgFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTH 128
89*********************.***************888889**********************6644.8********************* PP
TESEEEESS--HHHHHH CS
Response_reg 93 GakdflsKpfdpeelvk 109
Ga d+l Kp+ +e+l +
Thhalv10020213m 129 GAVDYLIKPVRMEALKN 145
************99986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF52172 | 6.83E-36 | 33 | 163 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 1.7E-41 | 34 | 174 | No hit | No description |
| SMART | SM00448 | 7.4E-31 | 35 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.221 | 36 | 151 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 7.9E-23 | 37 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.61E-27 | 38 | 150 | No hit | No description |
| SuperFamily | SSF46689 | 1.79E-15 | 234 | 285 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 235 | 285 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.7E-21 | 236 | 286 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.4E-6 | 238 | 285 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 672 aa Download sequence Send to blast |
MMNPSHGRGL GSTGGSSSGR NQGGESVVEM FPSGLRVLVV DDDPTCLMIL ERMLRTCLYE 60 VTKCNRAEMA LSLLRKNKHG FDIVISDVHM PDMDGFKLLE HVGLEMDLPV IMMSADDSKS 120 VVLKGVTHGA VDYLIKPVRM EALKNIWQHV VRKRRSEWSV PEHSGSVEDT GERQQQQQRG 180 GGGAAVSGGE DAADDNSSSV NEGNNWRSSS SSRKRKDEEG EEQGEDKDED ASNLKKPRVV 240 WSVELHQQFV AAVNQLGVEK AVPKKILELM NVPGLTRENV ASHLQFLPGN VLLFAEISDI 300 FSTLNGFDLQ ALAVTGQLPA QSLAQLQAAG LGRPAMVSKS GLPVSSIVDE RSIFSFDNPK 360 TRFGDGLGHH GQQQQTQQMN LLHGVPTGME PRQLAGLQQQ LPVGNRMSIQ QQIAAVRAGQ 420 NTGMMMTQPF PRGPPPPVLP SSQSSSIRQQ PMLSRSGFSG RSSVPESSRV LPTSYTNLAT 480 QHSSSSMTFN NFQQELPVNS FPLPSAPGLC VPSQVRKPIS SYQEEVNSSE AGFTAPSYDM 540 FSSNRQNDWD IRSIGIAFDA HQDAESVAFS NSEAYSSSSM SRNNTASDHG RSQQQQPPPG 600 MVSNHQVYGD RSGGSVRVKA ERVATDTATM AFHDQYSNQE DLMSALLKQE GIAPVDTEFD 660 FDAYSIDDIP V* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-19 | 235 | 285 | 4 | 54 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Thhalv10020213m |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK353418 | 0.0 | AK353418.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-42-G14. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024015041.1 | 0.0 | LOW QUALITY PROTEIN: two-component response regulator ARR1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | R0HK04 | 0.0 | R0HK04_9BRAS; Two-component response regulator | ||||
| STRING | XP_006297106.1 | 0.0 | (Capsella rubella) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Thhalv10020213m |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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