PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020539m
Common NameEUTSA_v10020494mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 511aa    MW: 55951.8 Da    PI: 7.8713
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020539mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-11161185226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C ++++t tCk+G++CkF H+
  Thhalv10020539m 161 GEKDCTHYMQTRTCKFGESCKFDHP 185
                      7889********************8 PP
2zf-CCCH33.19.7e-11211237127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+++ +t  CkyG rCkF+H++
  Thhalv10020539m 211 PGEPDCPYYIKTQRCKYGLRCKFNHPR 237
                      5789*********************96 PP
3zf-CCCH38.51.9e-12256280327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C f+++tG Ck+G +CkF+H++
  Thhalv10020539m 256 EPPCTFYMKTGKCKFGLTCKFHHPK 280
                      79*********************96 PP
4zf-CCCH38.32.2e-12330355227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+f+++tG CkyG++C+++H++
  Thhalv10020539m 330 GEVDCPFYLKTGSCKYGATCRYNHPE 355
                      6899********************96 PP
5zf-CCCH40.25.5e-13410434226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C+++++tG+Ck+G+rC+F+H+
  Thhalv10020539m 410 GQSECDYYMKTGECKFGERCRFHHP 434
                      7899********************8 PP
6zf-CCCH40.35.4e-13466487526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+++++tGtCkyG++CkF H+
  Thhalv10020539m 466 NCPYYMKTGTCKYGATCKFDHP 487
                      6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.817159187IPR000571Zinc finger, CCCH-type
SMARTSM003560.002159186IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9161185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5161186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4165184IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4210237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76210238IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7212237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5215237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4216236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601253281IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6253280IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-10256280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5257281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5258279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859328356IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6328355IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10330355IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5332356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5334355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047408436IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6408435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7408439IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10410434IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6414436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835461489IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6461488IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10466487IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5466488IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5467486IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MAHRHQLFSY ALQPSYAAAS AVSPAPPAPQ PQPQLQPQPK IGLSSLYGSS AADHYFPDTN  60
FRFLPRDGSE ALSNYSSSLG TLTSSSAMYH HLPNTTTTHL AYPQLIQQHQ EAWPPGVEVP  120
VAASAVEPLP PGVKRTSEDY FTKRLKLEST SHLPVYPQRP GEKDCTHYMQ TRTCKFGESC  180
KFDHPIWVPE GGIPDWKEAP LVPNDDYPER PGEPDCPYYI KTQRCKYGLR CKFNHPRAAA  240
AVSVENQDSL PERPSEPPCT FYMKTGKCKF GLTCKFHHPK DIQLPSSSQE MGTSEALTSD  300
PDATNNPHVT FTAALYHNSK GLPVRPLLQG EVDCPFYLKT GSCKYGATCR YNHPERTAFT  360
PQAAGINYPL VSSTAASVNL GLVNSAASLY QTLAQPTLGA LSAIYPQRPG QSECDYYMKT  420
GECKFGERCR FHHPADRLNA TTKQASQQPN VKLSLAGYPR REGALNCPYY MKTGTCKYGA  480
TCKFDHPAPG EVMAKTSSEA DAGGGADTNQ *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020539m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291450.0AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16.
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015631.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLV4NQA60.0V4NQA6_EUTSA; Uncharacterized protein
STRINGXP_006407309.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)