PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020666m
Common NameEUTSA_v10020666mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 470aa    MW: 51158.6 Da    PI: 6.9556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020666mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.7e-063603981154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  Thhalv10020666m 360 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 398
                      5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.659349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0067355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-11359412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-6359403No hitNo description
Gene3DG3DSA:4.10.280.101.1E-9363407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGDHHHDFFN SGSWWKVSSS SNSTSTSSSM RASSIESGGS AVFHDHKLHH HHSLATDHHL  60
QMIGLGLSSQ SPVDQWNQSL LRGDSKAETS FGVMLHQENL NLDAATSNAN ANTTSSTSSY  120
QLQESDSSHH HQALWRDPTQ INNNNSDYKP QNMTSSNRGF FLDHQFSPHG SSSTDSSTVT  180
CQGFAVDNSS MYAAATPNSS SAMFHHHHHQ AGEFNNLPGS SDQQPSSRSH QQSNLGYSQF  240
GSSTGNYDQM ASALPSTWFL RSSPPKPHSP LRFSNNATFW NPAATGNAGQ LPPHDASSNF  300
FPALQQPPQI HPQSFDQQRP KSISEIRDSS SSEVKRGGGD QPAAKRAKSE AASPSPALKV  360
RKEKMGDRIA ALQQLVSPFG KTDAASVLSE AIEYIKFLHQ QVSALSNPYM KSGASLHHQQ  420
SDHPKELEVS EEPDLRSRGL CLVPVSSTFP VTHDTTVDFW TPTFGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020666m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406363.10.0transcription factor bHLH123 isoform X3
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLV4NMY30.0V4NMY3_EUTSA; Uncharacterized protein
STRINGXP_006406363.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]