PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020724m
Common NameEUTSA_v10020724mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GeBP
Protein Properties Length: 449aa    MW: 48909.2 Da    PI: 4.6435
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020724mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.49e-38133231298
           DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      lfqrlw++eDei lL+G++d+ ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+
  Thhalv10020724m 133 LFQRLWTDEDEIELLRGFLDYiTTHRGSSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISR 226
                      79*******************9999***99999************************************************************* PP

           DUF573  94 kiWgs 98 
                      kiW++
  Thhalv10020724m 227 KIWNQ 231
                      ***85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.7E-34134230IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MTSDQRDAVF SLESPDLEEG GVGDGGESDT DEDLRENDDV VMPETNEAED DDPEEEDLNS  60
PSTSSLAMVS AVPTTAVVSG TATTSSSTGA VTVALPAGSA VPVSVIPADS DPKWHRMTEI  120
VHQRPAIDDS RRLFQRLWTD EDEIELLRGF LDYITTHRGS SSHPPDTAPF YEQIKSKLQL  180
DFNKNQLVEK LRRLKKKYRN VMSKISSGKE VFFKSPHDQS TFEISRKIWN QTGKIIGFED  240
NNVMDFDETN NNHHGNGNYS TFNSPSSNPN LEIDSENGVE RKLTMSSSSG SRKRSRSRIG  300
KIEEDNKPIN LSDGQIPNAA INVNLNETAA AGIGGNLGGL IEETVKNCVS PVIKEMMNGT  360
TSMMMAAMGG FSGSGGGGVH GFGSLSPMFT RPLSFGFGVE GGGNKALADE RWRKQQILEL  420
EVYSRRLELV QEQIRATLHE LKTMPSGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020724m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0701360.0AY070136.1 Arabidopsis thaliana AT3g04930/T9J14_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408134.10.0probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLV4M3X40.0V4M3X4_EUTSA; Uncharacterized protein
STRINGXP_006408134.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.10.0DNA-binding storekeeper protein-related transcriptional regulator