PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020900m
Common NameEUTSA_v10020900mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 390aa    MW: 43343.7 Da    PI: 7.8806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020900mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-114167127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +++++C++f rtG C++G++C+F+H++
  Thhalv10020900m 41 PGEPNCSYFIRTGLCRFGSTCRFNHPR 67
                     5789*********************96 PP
2zf-CCCH382.7e-1288112327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tGtCk+G +CkF+H++
  Thhalv10020900m  88 QPECEYYLKTGTCKFGVSCKFHHPR 112
                      799********************96 PP
3zf-CCCH36.48.8e-12134158327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C +f+rtG+Ck+G++CkF+H++
  Thhalv10020900m 134 EVDCAYFLRTGHCKFGGTCKFNHPQ 158
                      578********************97 PP
4zf-CCCH37.15.1e-12276302127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+++tG Ck+G  CkF+H++
  Thhalv10020900m 276 PGQPECQFYMKTGDCKFGTVCKFHHPR 302
                      5789*********************96 PP
5zf-CCCH35.41.8e-11322348127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f+ r+G+Ck+G++CkF H++
  Thhalv10020900m 322 PGEPLCVFYTRYGICKFGPSCKFDHPM 348
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-44067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3614068IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-64568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-44667IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.46485113IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-585112IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-1088112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-591112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549131159IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5131158IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9134158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6134160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22275303IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5279304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4281303IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7321348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187321349IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8323348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5324348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4326346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMNQDA MWQMNLSSDE TMETGSYPER PGEPNCSYFI RTGLCRFGST  60
CRFNHPRDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVSCKFHH PRNKAGIAGR  120
VSLNMLGYPL RSNEVDCAYF LRTGHCKFGG TCKFNHPQPQ PTTNMMVPAS GQQSYPWSRA  180
SFIANPRWQD PSSFTPLIMP QGVVPVQGWN PYSGQLGSVS PSGTGNDHNY RNLQQNETIE  240
SGSQSQGSFS GFNSGSSVPL RGFYALPREN VFPERPGQPE CQFYMKTGDC KFGTVCKFHH  300
PRDRQVPPPD CLLSPIGLPL RPGEPLCVFY TRYGICKFGP SCKFDHPMRV FTYENTASET  360
DEVVETSSGN PTRQAATTSG KDTTIDTQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020900m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408379.10.0zinc finger CCCH domain-containing protein 33 isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLV4M4F10.0V4M4F1_EUTSA; Uncharacterized protein
STRINGXP_006408379.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]