PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020908m
Common NameEUTSA_v10020900mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 386aa    MW: 42776 Da    PI: 7.7301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020908mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-114167127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +++++C++f rtG C++G++C+F+H++
  Thhalv10020908m 41 PGEPNCSYFIRTGLCRFGSTCRFNHPR 67
                     5789*********************96 PP
2zf-CCCH22.81.6e-07921081127
                      GTS--TTTTT-SS-SSS CS
          zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                      +tGtCk+G +CkF+H++
  Thhalv10020908m  92 ETGTCKFGVSCKFHHPR 108
                      79*************96 PP
3zf-CCCH36.48.7e-12130154327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C +f+rtG+Ck+G++CkF+H++
  Thhalv10020908m 130 EVDCAYFLRTGHCKFGGTCKFNHPQ 154
                      578********************97 PP
4zf-CCCH37.25.1e-12272298127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+++tG Ck+G  CkF+H++
  Thhalv10020908m 272 PGQPECQFYMKTGDCKFGTVCKFHHPR 298
                      5789*********************96 PP
5zf-CCCH35.41.8e-11318344127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f+ r+G+Ck+G++CkF H++
  Thhalv10020908m 318 PGEPLCVFYTRYGICKFGPSCKFDHPM 344
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-44067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3614068IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-64568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-44667IPR000571Zinc finger, CCCH-type
SMARTSM003560.7285108IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-592108IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.29692109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549127155IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5127154IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9130154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6130156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-4133153IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5271298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22271299IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4277299IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187317345IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8319344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4322342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMNQDA MWQMNLSSDE TMETGSYPER PGEPNCSYFI RTGLCRFGST  60
CRFNHPRDRE LVIATARMRG EYPERIGQPE CETGTCKFGV SCKFHHPRNK AGIAGRVSLN  120
MLGYPLRSNE VDCAYFLRTG HCKFGGTCKF NHPQPQPTTN MMVPASGQQS YPWSRASFIA  180
NPRWQDPSSF TPLIMPQGVV PVQGWNPYSG QLGSVSPSGT GNDHNYRNLQ QNETIESGSQ  240
SQGSFSGFNS GSSVPLRGFY ALPRENVFPE RPGQPECQFY MKTGDCKFGT VCKFHHPRDR  300
QVPPPDCLLS PIGLPLRPGE PLCVFYTRYG ICKFGPSCKF DHPMRVFTYE NTASETDEVV  360
ETSSGNPTRQ AATTSGKDTT IDTQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020908m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408379.10.0zinc finger CCCH domain-containing protein 33 isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLV4NSZ50.0V4NSZ5_EUTSA; Uncharacterized protein
STRINGXP_006408379.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]