PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020915m
Common NameEUTSA_v10020915mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 384aa    MW: 41299.9 Da    PI: 8.4064
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020915mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
  Thhalv10020915m 132 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 176
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.581125181IPR017930Myb domain
SuperFamilySSF466891.2E-16127180IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-18128179IPR006447Myb domain, plants
SMARTSM007171.7E-10129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-11131175IPR009057Homeodomain-like
PfamPF002494.8E-11132176IPR001005SANT/Myb domain
CDDcd001673.27E-9132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGGTCGGNG GGAGGGSSSS AVKLFGVRLT DGSIIKKSAS  60
MGNLSALAVA AAAAHHRLSP SSPLATPNHH NDSPLSDHAR YSNQHNEGYL SDDLAHGSGS  120
IHRRGERKRG VPWTEEEHRL FLVGLQKLGK GDWRGISRNY VTSRTPTQVA SHAQKYFIRH  180
TCSSRRKRRS SLFDMVTDEM VTESSPTQED QTINQSPPSK EPENKTHLPS LELSLNNTTE  240
PEAVIATATP QEKPEEAVEP SMLVQGGFFP PCFPVTYTFW LPATSTSLHA TEHSLEAEAS  300
SQKHQVLKPK PEFAKERVNM DELVGMSQLR IGMATRHETE ASPSPSPLSL NLIGEPSRPS  360
AFHTNGSVNG SDLSKGNSAI QAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020915m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406842.10.0transcription factor MYBS3
TrEMBLV4LCW90.0V4LCW9_EUTSA; Uncharacterized protein
STRINGXP_006406842.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.10.0MYB_related family protein