PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10020973m
Common NameEUTSA_v10020900mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 370aa    MW: 41236.3 Da    PI: 8.1283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10020973mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-112147127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +++++C++f rtG C++G++C+F+H++
  Thhalv10020973m 21 PGEPNCSYFIRTGLCRFGSTCRFNHPR 47
                     5789*********************96 PP
2zf-CCCH38.12.5e-126892327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     +++C ++++tGtCk+G +CkF+H++
  Thhalv10020973m 68 QPECEYYLKTGTCKFGVSCKFHHPR 92
                     799********************96 PP
3zf-CCCH36.58.2e-12114138327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C +f+rtG+Ck+G++CkF+H++
  Thhalv10020973m 114 EVDCAYFLRTGHCKFGGTCKFNHPQ 138
                      578********************97 PP
4zf-CCCH37.24.8e-12256282127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+++tG Ck+G  CkF+H++
  Thhalv10020973m 256 PGQPECQFYMKTGDCKFGTVCKFHHPR 282
                      5789*********************96 PP
5zf-CCCH35.51.7e-11302328127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f+ r+G+Ck+G++CkF H++
  Thhalv10020973m 302 PGEPLCVFYTRYGICKFGPSCKFDHPM 328
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3612048IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-42047IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-62548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-42647IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-56592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4646593IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-106892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-57192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549111139IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6114140IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4117137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22255283IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5255282IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8257282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5259284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4261283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187301329IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7301328IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5304328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4306326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MWQMNLSSDE TMETGSYPER PGEPNCSYFI RTGLCRFGST CRFNHPRDRE LVIATARMRG  60
EYPERIGQPE CEYYLKTGTC KFGVSCKFHH PRNKAGIAGR VSLNMLGYPL RSNEVDCAYF  120
LRTGHCKFGG TCKFNHPQPQ PTTNMMVPAS GQQSYPWSRA SFIANPRWQD PSSFTPLIMP  180
QGVVPVQGWN PYSGQLGSVS PSGTGNDHNY RNLQQNETIE SGSQSQGSFS GFNSGSSVPL  240
RGFYALPREN VFPERPGQPE CQFYMKTGDC KFGTVCKFHH PRDRQVPPPD CLLSPIGLPL  300
RPGEPLCVFY TRYGICKFGP SCKFDHPMRV FTYENTASET DEVVETSSGN PTRQAATTSG  360
KDTTIDTQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10020973m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408379.10.0zinc finger CCCH domain-containing protein 33 isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLV4M4F10.0V4M4F1_EUTSA; Uncharacterized protein
STRINGXP_006408379.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]