PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021037m
Common NameEUTSA_v10020686mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 353aa    MW: 37155.7 Da    PI: 8.3313
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021037mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.1e-091181027
                     GGTS--TTTTT-SS-SSS CS
          zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                     +rtGtCk+G++Ck++H++
  Thhalv10021037m  1 MRTGTCKFGASCKYHHPR 18
                     8***************96 PP
2zf-CCCH39.31.1e-123963226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     ++++C++++rtG+Ck+G +C+F H+
  Thhalv10021037m 39 GEKECSYYMRTGQCKFGLTCRFDHP 63
                     7899********************9 PP
3zf-CCCH40.45e-13197221226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++f+rtG Ck+G++C+++H+
  Thhalv10021037m 197 DQPECQYFMRTGDCKFGSSCRYHHP 221
                      689*********************9 PP
4zf-CCCH33.19.7e-11243268227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      + + C +fa+ G+Ck+G+ CkF H++
  Thhalv10021037m 243 GVAQCTHFAQHGICKFGPACKFDHSM 268
                      6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035625118IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.638119IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-63764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3893765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53964IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-103963IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-44362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155195223IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6195222IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10197221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6198224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-5201221IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4241268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554241269IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8243267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5244268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001247267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRTGTCKFGA SCKYHHPRQG ASSVTPVSLS YLGYPLRPGE KECSYYMRTG QCKFGLTCRF  60
DHPVPLAVQG PPQQQPQQQP QQQLQTIYPT LQSQPVPSSQ QYGLVLARPS LLPASYLQSH  120
YGPPMVLPPG MVPYPGWNPY QASLSAMPSP GTQPSIGSSS VYGIAPLSPS GTVYTGTYQS  180
GASSNTSKEQ SFPQRPDQPE CQYFMRTGDC KFGSSCRYHH PLDAVQPKTG VLLSSIGLPL  240
RPGVAQCTHF AQHGICKFGP ACKFDHSMAS SLSYSPSASS LTDMPVAPYP IGSSSLSGAS  300
APVSSSNEPT TEAVTAAVSS PMVSGLSRQE PAEASGDSAS VSGSVEAKTS SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021037m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407949.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU41e-177C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4MAC90.0V4MAC9_EUTSA; Uncharacterized protein
STRINGXP_006407949.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-149C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]