PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021103m
Common NameEUTSA_v10021103mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 335aa    MW: 37673.8 Da    PI: 7.727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021103mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-073454526
                     --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      C f+++ G+C yG+rC++ H+
  Thhalv10021103m 34 VCTFYQK-GICLYGSRCRYEHV 54
                     5******.***********997 PP
2zf-CCCH20.86.9e-07116138326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++C+ fa+ G C++G++C+ +Hg
  Thhalv10021103m 116 YPICS-FAAAGDCPRGNQCPHMHG 138
                      68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.234128IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.232956IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-53153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-43453IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-43454IPR000571Zinc finger, CCCH-type
SMARTSM003560.028113139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.014113140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.6E-10163241IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.0E-12170246No hitNo description
CDDcd001626.18E-4181241No hitNo description
PROSITE profilePS5008912.489182240IPR001841Zinc finger, RING-type
SMARTSM001842.3E-7182239IPR001841Zinc finger, RING-type
PfamPF000975.2E-8182239IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180206215IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.685269298IPR000571Zinc finger, CCCH-type
SMARTSM003560.39269297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSDRILCKFF LHGSCLKGEN CEYSHDSKNP PNNVCTFYQK GICLYGSRCR YEHVRTCQPQ  60
SLSASNVPRP TLCSDSQPQS LTPSMNRRPK AGFAGDNDDG DKSPNNVVHY IHPREYPICS  120
FAAAGDCPRG NQCPHMHGDI CTTCGKKCLH PFRPEEREEH TKECEKKQKH IEALKKSQEI  180
ECSVCLDRIL SKATPGERKF GLLTECDHPF CIQCIRNWRS SSPVSGMDVN STLRACPICR  240
KLSYFVVPSV VWYSTPEEKE EIIDTYKAKL RSIDCKHFNF GNGNCPFGGS CFYKHAYSDG  300
RLEEVVLRHL GSQEGETLIA DTIRLSEFLG GLQI*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021103m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0703660.0AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds.
GenBankBT0009880.0BT000988.1 Arabidopsis thaliana clone U18319 unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407766.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLV4LZC70.0V4LZC7_EUTSA; Uncharacterized protein
STRINGXP_006407766.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.20.0C3H family protein