PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021125m
Common NameEUTSA_v10021125mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 329aa    MW: 36943.6 Da    PI: 6.9186
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021125mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.81.2e-54201461128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdee++++yLk+kv + ++++  +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++
  Thhalv10021125m  20 LPPGFRFHPTDEEIITHYLKEKVFNVRFTA-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATASGYWKATGKDKEIFR 112
                      79*************************999.78***************8888899*************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       kg lvg+kktLvfy+grapkgekt+Wvmheyrl
  Thhalv10021125m 113 GKGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 146
                      9*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6117172IPR003441NAC domain
PROSITE profilePS5100557.26220171IPR003441NAC domain
PfamPF023653.6E-2921146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNVRFTAA AIGQADLNKN  60
EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATASGY WKATGKDKEI FRGKGCLVGM  120
KKTLVFYRGR APKGEKTNWV MHEYRLDGKY SYHNLPKSAR DEWVVSRVFH KNAPPPTTTS  180
TNQLIRIDSL ENIDHLLNFS SLPPLIDPGF LGQPGPSFSG AGQQHDLKPI LHHPTTGPID  240
NTYLSGQSLI TYPYHSVQNN NNGMIKLEHS LVSVSQETGL SSDVNTTATQ EISSYQKMVY  300
PAANAVMMDG KKTSYDDLDD LGIFWDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-491817315167NO APICAL MERISTEM PROTEIN
1ut4_B3e-491817315167NO APICAL MERISTEM PROTEIN
1ut7_A3e-491817315167NO APICAL MERISTEM PROTEIN
1ut7_B3e-491817315167NO APICAL MERISTEM PROTEIN
3swm_A3e-491817318170NAC domain-containing protein 19
3swm_B3e-491817318170NAC domain-containing protein 19
3swm_C3e-491817318170NAC domain-containing protein 19
3swm_D3e-491817318170NAC domain-containing protein 19
3swp_A3e-491817318170NAC domain-containing protein 19
3swp_B3e-491817318170NAC domain-containing protein 19
3swp_C3e-491817318170NAC domain-containing protein 19
3swp_D3e-491817318170NAC domain-containing protein 19
4dul_A3e-491817315167NAC domain-containing protein 19
4dul_B3e-491817315167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021125m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3616230.0AF361623.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
GenBankAY0818340.0AY081834.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408227.10.0NAC domain-containing protein 46
RefseqXP_024015310.10.0NAC domain-containing protein 46
SwissprotQ9SQQ60.0NAC46_ARATH; NAC domain-containing protein 46
TrEMBLV4LGP00.0V4LGP0_EUTSA; Uncharacterized protein
STRINGXP_006408227.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.10.0NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]