PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021133m
Common NameEUTSA_v10021133mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 326aa    MW: 35081.9 Da    PI: 7.0116
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021133mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.51.9e-30102155155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Thhalv10021133m 102 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 155
                      59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05999158IPR017930Myb domain
SuperFamilySSF466893.23E-2099159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30101160IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-24103155IPR006447Myb domain, plants
PfamPF002491.3E-7105154IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MREDDSDWFA RWEEELPSPE ELMPLSQSLI SPDLALAFDI RSPVHGNGNS GQPHHHHQST  60
PPTPSQLQLP SSQANSSAEF AADSADLGSG AAGDEPARTL KRPRLVWTPQ LHKRFVDAVA  120
HLGIKNAVPK TIMQLMSVDG LTRENVASHL QKYRLYLKRM QGLSSGGGAG SDPATDRLFA  180
SSPVPAHFLH PNRVPSSDHF MPSFVPIATL QQQQQMAAAA AAAAAAAANP HLQPPQFHHR  240
QIAAAHFGSP TNGQFNSPTS NGQFNSPTTT NGKFDPSFLA RQTQPLHRMS TPSLHSPVGN  300
YSEDLESANA NGGRTVLTLF PTRDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-32102158157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021133m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529380.0AK352938.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-18-K10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015707.10.0transcription factor MYBC1
SwissprotO222103e-71MYBC1_ARATH; Transcription factor MYBC1
TrEMBLE4MWP10.0E4MWP1_EUTHA; mRNA, clone: RTFL01-18-K10
TrEMBLV4NQR90.0V4NQR9_EUTSA; Uncharacterized protein
STRINGXP_006407508.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-147G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]