PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021282m
Common NameEUTSA_v10021271mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 282aa    MW: 31649.4 Da    PI: 8.9741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021282mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.4e-08753254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +  +  rE+ RR+++N+ f eL  +l  +      K++Ka+iL+ +v+ +k+L
  Thhalv10021282m  7 KSQKAGREKLRREKLNEHFVELGNVLDRP------KNDKATILTDTVQLLKEL 53
                     5566779******************9888......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.3E-12576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.877560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-6657No hitNo description
PfamPF000109.3E-6753IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-61159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDVSTRKSQK AGREKLRREK LNEHFVELGN VLDRPKNDKA TILTDTVQLL KELTSEVNKL  60
KFEYTTLTDE SRELTQEKND LREEKTSLKS DIENLNLQYQ QRLRSMSTWG AAMDHTVMMA  120
PPPSFPYPMP MAMPPGSIPM HPSMPSYTYF GNQNPSMIPA PCPTYMPYMP PNTVVEQQSV  180
HIPQNPSNRS REPRTKVSRE SRSEKAEDSN DVATQLELKT PGSTSDKDTL QRPEKTKRSK  240
RNSNNSIEES SHSSKCSSSP SVRDNSSSSS VAGGQKPDDA K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021282m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3175070.0AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBankAY0651070.0AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBankAY0817030.0AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406448.11e-177transcription factor bHLH121
SwissprotQ9LT231e-168BH121_ARATH; Transcription factor bHLH121
TrEMBLV4LBS80.0V4LBS8_EUTSA; Uncharacterized protein
STRINGXP_006406448.11e-177(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-151bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]