PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021305m
Common NameEUTSA_v10021305mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 277aa    MW: 31297.8 Da    PI: 8.7727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021305mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.64.6e-3233144199
                      EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                      f+k ltpsdv+k++rlv+pk++ae++              + +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v 
  Thhalv10021305m  33 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnggggddvaAETTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVF 126
                      99*******************************999999777889************************************************* PP

                      EEE-SS.SEE..EEEEE-S CS
               B3  82 Fkldgr.sefelvvkvfrk 99 
                      F+++ r +  +l+++++r+
  Thhalv10021305m 127 FQRH-RfDLHRLFIGWRRR 144
                      **65.44788889999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4025153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-3031145IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-2732135No hitNo description
PfamPF023622.0E-2933144IPR003340B3 DNA binding domain
PROSITE profilePS5086313.18333145IPR003340B3 DNA binding domain
SMARTSM010193.0E-2433145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSVNYYSRDI IHHNTLSLHH HQNDAVAQRE SLFEKSLTPS DVGKLNRLVI PKQHAEKYFP  60
LNNGGGGDDV AAETTEKGML LSFEDESGKC WKFRYSYWNS SQSYVLTKGW SRYVKDKHLD  120
AGDVVFFQRH RFDLHRLFIG WRRRGEASSS SAVSAVSQEA RVNTTAYWSG LTTPYHQVHA  180
STTYPNIHHE YSHYGAVAES PTVVAGSSRT VRLFGVNLEC HGDVVEPPPC PDGYNGQHIY  240
YYSTPNPMVV FRWSYCGVKF RSIAKLRLSN QSNGAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-49261441113B3 domain-containing transcription factor NGA1
5os9_B8e-49261441113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021305m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4410760.0AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene).
GenBankAK1752810.0AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015755.10.0B3 domain-containing protein At3g11580
SwissprotQ8RYD31e-147Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLV4LEI40.0V4LEI4_EUTSA; Uncharacterized protein
STRINGXP_006407432.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-147B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]