PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021307m
Common NameEUTSA_v10021307mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 277aa    MW: 30028.7 Da    PI: 8.3979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021307mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011109131123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ Cgk F++   L  H  +H
  Thhalv10021307m 109 YKCSVCGKAFPSYQALGGHKASH 131
                      9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.801109136IPR007087Zinc finger, C2H2
SMARTSM003550.0043109131IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-13109132IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-4109131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.5E-9109131No hitNo description
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-9164191No hitNo description
PROSITE profilePS501579.099169191IPR007087Zinc finger, C2H2
SMARTSM003550.17169191IPR015880Zinc finger, C2H2-like
PfamPF139129.2E-14169193IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MALEAMNSPS FTIRKHKIDS TEDLMNDAVF MEPWLKRKRS KRQRSHSPTS SSSSPPRSRP  60
KSQNHQDLTE EEYLALCLLM LANDQPSDHQ PQTRFQPSPP PQESTRLSYK CSVCGKAFPS  120
YQALGGHKAS HRIKPPTATT TDDSTAPSIS VAGDKPTNSN AVAPSGKIHE CSICHKVFPT  180
GQALGGHKRC HYEGNLGGGG GGSKSVSHSG SVSSTVSEER SHRGFIDLNL PALPELSLHH  240
NPIVDEEILS PLTGKKPLLL TDHDQVIKKE DFSLGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13441LKRKRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021307m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531110.0AK353111.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-D01.
GenBankDQ8690340.0DQ869034.1 Thellungiella halophila C2H2 zinc finger protein 1 (ZF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406484.10.0zinc finger protein AZF2
SwissprotQ9SSW21e-121AZF2_ARATH; Zinc finger protein AZF2
TrEMBLA7J3870.0A7J387_EUTHA; C2H2 zinc finger protein 1
TrEMBLV4LZI20.0V4LZI2_EUTSA; Uncharacterized protein
STRINGXP_006406484.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-102zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]