PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021383m
Common NameEUTSA_v10021383mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 251aa    MW: 28308.9 Da    PI: 7.0506
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021383mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.32.2e-1428108286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W+++ + +Liea  e+  +l+rg+l++++W+ev++++   +  g  ++ +qCk++++ l+k+yk +k+  ++       ++ +fd+l+
  Thhalv10021383m  28 WSEDATATLIEAWGERYVHLNRGNLRQNDWKEVADAVnssHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------SWCFFDRLD 108
                      *************************************9666667788******************9998886.......499999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2526109No hitNo description
SMARTSM005954.2E-435115IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
METTPETQSK PQSQSGSHRL PAGREDWWSE DATATLIEAW GERYVHLNRG NLRQNDWKEV  60
ADAVNSSHGN GRPKTDVQCK NRIDTLKKKY KTEKAKPSSS WCFFDRLDFL IGPVVKKSSG  120
AGVVKPALMN PNLHPTGSKS TGSSLDDDDD DDDDDVGDWG FVVRKHRRVE DVDPSEGSSC  180
RDLARAILKL GEVYERIEGT KQQMMIELEK QRMEVAKELE LQRMNMLMEM QMELEKSKLG  240
KRRAGSGKKL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021383m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535510.0AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407472.10.0trihelix transcription factor ASIL2
TrEMBLE4MYF40.0E4MYF4_EUTHA; mRNA, clone: RTFL01-52-B11
TrEMBLV4LEM30.0V4LEM3_EUTSA; Uncharacterized protein
STRINGXP_006407472.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-117sequence-specific DNA binding transcription factors