PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021405m
Common NameEUTSA_v10021405mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 245aa    MW: 25598.7 Da    PI: 10.0146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021405mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.4e-073861225
                     -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                     k ++C  f+ t  C++G++C+F H
  Thhalv10021405m 38 KSKPCTKFFSTSGCPFGENCHFLH 61
                     7789******************** PP
2zf-CCCH35.22e-11210235127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt++C +f++ G C +GdrC+FaHg+
  Thhalv10021405m 210 FKTKICERFSK-GNCTFGDRCHFAHGE 235
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843664IPR000571Zinc finger, CCCH-type
SMARTSM003560.213663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-63763IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-53861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-83861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.07E-15102183IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.1E-16112181IPR004088K Homology domain, type 1
SMARTSM003221.8E-11112182IPR004087K Homology domain
PROSITE profilePS5008414.55113177IPR004088K Homology domain, type 1
PfamPF000134.6E-12115179IPR004088K Homology domain, type 1
CDDcd001052.29E-13115177No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-15204239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.821209236IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7209235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8209239IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-9210235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDARKRGRPE AGSYNSNGGG FKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL  60
HYVPGGYNAV AQLTNMGPPM PQVSRNMQGP VGGGRFSGRG ESGPGHVSSF GASATAKISV  120
DASLAGAIIG KGGVSSKQIC RQTGAKLSIQ DHERDPNLKN IELEGTFEQI NEASAMVREL  180
IGRLNSAARK PPGGGGGIGS EGKPHPGSNF KTKICERFSK GNCTFGDRCH FAHGEAELRR  240
SGIA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021405m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535310.0AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407365.11e-178zinc finger CCCH domain-containing protein 36
SwissprotQ9C7C31e-154C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLE4MYD41e-177E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10
TrEMBLV4M8U61e-177V4M8U6_EUTSA; Uncharacterized protein
STRINGXP_006407365.11e-178(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-138C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]