PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021527m
Common NameEUTSA_v10021527mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 209aa    MW: 23595.6 Da    PI: 4.9412
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021527mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-1830121199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv +ps + ++ ++++p +f++  g+k   s  +tle++ g + ++kl  ++ ++++++++GW+eF++a+ + eg f++Fk++g+s+f  +v
  Thhalv10021527m  30 FFKVVLPSTMKSN-MMRIPTRFVKLQGSK--LSEVVTLESPVGFKRSIKL--KRIGEEIWFQEGWSEFAEAHSISEGHFLIFKYKGNSSF--LV 116
                      7888877776666.6********555554..7789***************..**************************************..** PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      ++f+ 
  Thhalv10021527m 117 TIFDV 121
                      *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-2424124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-2325124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.99929122IPR003340B3 DNA binding domain
SMARTSM010196.9E-2030122IPR003340B3 DNA binding domain
CDDcd100172.25E-1830120No hitNo description
PfamPF023622.9E-1630120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVTTRGTQAR VTAVSHRRPP TKPESPVKNF FKVVLPSTMK SNMMRIPTRF VKLQGSKLSE  60
VVTLESPVGF KRSIKLKRIG EEIWFQEGWS EFAEAHSISE GHFLIFKYKG NSSFLVTIFD  120
VSACEIDYPL DEVHISDSDD EVVDITDAEF LPTQGTGGDD QSVKGGASED KRKNRPRDNE  180
FEKILNDVDG INPIVLEEEE EEKRVFRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021527m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406546.11e-151B3 domain-containing protein At3g18960
SwissprotQ84R272e-98Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLV4LW151e-150V4LW15_EUTSA; Uncharacterized protein
STRINGXP_006406546.11e-151(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.16e-97B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]