PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021612m
Common NameEUTSA_v10021612mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 183aa    MW: 19297.8 Da    PI: 9.9535
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021612mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-184478135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++
  Thhalv10021612m 44 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQ 78
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-123893IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7163892IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-123989No hitNo description
Gene3DG3DSA:3.30.50.108.9E-154278IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.65E-124386No hitNo description
PfamPF003203.2E-164478IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404469IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSEGSEETRT KLDSAGELSD VDNENCSSSG SGGGGSCGET KRTCVDCGTI RTPLWRGGPA  60
GPKSLCNACG IKSRKKRQAA LGTKPEEKKK ARKSSSSSDL SVEHQNAKNK INKDDDPKSC  120
SSSKSISSSS SSKGVSKFLD LGFKVPVMKR SAVEKKRLWR KLGEEERAAV LLMALSCGSV  180
YA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021612m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291781e-84AK229178.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-46-O07.
GenBankBT0108441e-84BT010844.1 Arabidopsis thaliana At3g16870 mRNA, complete cds.
GenBankBT0126111e-84BT012611.1 Arabidopsis thaliana At1g35180 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406796.11e-127GATA transcription factor 17
SwissprotQ9LIB52e-88GAT17_ARATH; GATA transcription factor 17
TrEMBLV4LWN81e-125V4LWN8_EUTSA; Uncharacterized protein
STRINGXP_006406796.11e-126(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.12e-73GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]