PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10021708m
Common NameEUTSA_v10021708mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GATA
Protein Properties Length: 149aa    MW: 16272.7 Da    PI: 10.6743
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10021708mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.4e-184174134
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                     C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+
  Thhalv10021708m 41 CAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 74
                     999*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.7E-143586IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.3873571IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-133781No hitNo description
Gene3DG3DSA:3.30.50.106.0E-153974IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.01E-134096No hitNo description
PROSITE patternPS0034404166IPR000679Zinc finger, GATA-type
PfamPF003203.1E-164174IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MLLFPIFDSE AMKSSKFTSA DAIEESSSSS NGGISNEKKS CAICGTSKTP LWRGGPAGPK  60
SLCNACGIRN RKKRRIVIGN RSEDKKKKKN PTRNSKLGDS LKQRLMELGR EVMLQRSTAE  120
NQRRKKLGEE EQAAVLLMAL SYASSVYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17288KRRIVIGNRSEDKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10021708m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407908.11e-104GATA transcription factor 15 isoform X1
SwissprotQ8LG101e-77GAT15_ARATH; GATA transcription factor 15
TrEMBLV4NRR81e-103V4NRR8_EUTSA; Uncharacterized protein
STRINGXP_006407908.11e-103(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-67GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]