PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022042m
Common NameEUTSA_v10022042mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WOX
Protein Properties Length: 354aa    MW: 40306.8 Da    PI: 7.5188
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022042mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.67.6e-2276135357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t++ql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Thhalv10022042m  76 SRWNPTPDQLRVLEELYRQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 135
                      7*****************99**************************************97 PP
2Wus_type_Homeobox117.94.6e-3875137365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Ptp+Q+++Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
    Thhalv10022042m  75 SSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 137
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.1E-573140IPR001356Homeobox domain
SuperFamilySSF466899.4E-1276141IPR009057Homeodomain-like
PfamPF000461.5E-1976135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-976135IPR009057Homeodomain-like
CDDcd000864.40E-677137No hitNo description
PROSITE profilePS5007110.86781136IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MWMMGYNEGG ADSFNGARKL RPLIPRLSSC PTATAANTNS DHRFNMAVVT MTAEQNKREL  60
MMLNSEPHHP PVMVSSRWNP TPDQLRVLEE LYRQGTRTPS ADHIQQITAQ LRRYGKIEGK  120
NVFYWFQNHK ARERQKRRRQ MENGHDESVI TTTSSVSNHG FDKKEQLGYN VEQTKSWICS  180
VGCDTQPEKP RDHHHQEDPV SISMVAKKRN GLHRGDERQS FPGRNGTWQM MQLPHGPYPS  240
SQHQYHHQLI LNSTTVLSNM STSNSTVPAA KDTVVVVSPS LLRARAAMNT ETCHDNKDQE  300
QHEDCSNDES DHQEQTLELF PLRKEGFCGN GGDDEKGRES GIHSFYEFLP LKN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022042m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2513940.0AY251394.1 Arabidopsis thaliana WOX1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015601.10.0WUSCHEL-related homeobox 1
SwissprotQ6X7K00.0WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLV4M7110.0V4M711_EUTSA; Uncharacterized protein
STRINGXP_006406665.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.10.0WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]