PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022043m
Common NameEUTSA_v10022043mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 132aa    MW: 15008.9 Da    PI: 4.376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022043mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.2e-1228121287
                      EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                      +k+l  sdv+++grl lp++ +e++             g    ++++++    + ++  v++  rk+ g+y+l +GW+  vkan+ +++D + F
  Thhalv10022043m  28 KKTLYDSDVSQQGRLNLPRQDFEDFiipemagdlvqnlG----NGVKVKALVVDEEEHIVTF-KRKSNGSYILCAGWSAIVKANNFQTNDLIGF 116
                      69999*****************99999999996655331....3444444445555555555.2466777**********************99 PP

                      EE-SS CS
               B3  83 kldgr 87 
                        +++
  Thhalv10022043m 117 CWVNS 121
                      87654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1724126IPR015300DNA-binding pseudobarrel domain
CDDcd100174.28E-1625128No hitNo description
Gene3DG3DSA:2.40.330.109.1E-1725124IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-727131IPR003340B3 DNA binding domain
PfamPF023621.1E-829123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAQDQEHNQD EELNLELGLA LYDPWVIKKT LYDSDVSQQG RLNLPRQDFE DFIIPEMAGD  60
LVQNLGNGVK VKALVVDEEE HIVTFKRKSN GSYILCAGWS AIVKANNFQT NDLIGFCWVN  120
SSDRFYLQRI N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022043m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006866.18e-43B3 domain-containing protein At1g10455
TrEMBLV4LBS41e-92V4LBS4_EUTSA; Uncharacterized protein
STRINGXP_006406442.12e-93(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1494634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-07RAV family protein