PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022070m
Common NameEUTSA_v10022070mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 197aa    MW: 23010.2 Da    PI: 9.6794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022070mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-0884125447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      W++e++e ++ + k++G + W++Ia  +  ++ +kq+  + ++y
  Thhalv10022070m  84 WSKEDHEWFLIGLKRFGDK-WDKIADLLD-TKNAKQVLIYAHNY 125
                      *****************99.*********.******98888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.6155IPR017884SANT domain
SMARTSM007170.01253IPR001005SANT/Myb domain
SuperFamilySSF466891.42E-8458IPR009057Homeodomain-like
SMARTSM007174.6E-580128IPR001005SANT/Myb domain
PROSITE profilePS512949.92980130IPR017930Myb domain
SuperFamilySSF466892.17E-982127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-583128IPR009057Homeodomain-like
CDDcd001672.88E-584126No hitNo description
PfamPF002498.7E-784125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAAKSWTREE NVQFKNALVK FSAFCPTRFQ SVAQYLQKSK VDVKERYKEM VKDLLEIGSS  60
RIAFAEGLTD AAAQRLYPVD ETIWSKEDHE WFLIGLKRFG DKWDKIADLL DTKNAKQVLI  120
YAHNYFYWQS AKKNVLKRRR VNIDNRMVEI IDVDSPPPEQ QENHHVLPQS QPQQRQIALA  180
IGHHAWSSYS EPHRRP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136140KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022070m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407532.11e-146uncharacterized protein LOC18023769
TrEMBLV4LEW81e-144V4LEW8_EUTSA; Uncharacterized protein
STRINGXP_006407532.11e-145(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15934911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-21MYB family protein