PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022197m
Common NameEUTSA_v10022197mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB_related
Protein Properties Length: 134aa    MW: 15188.1 Da    PI: 8.5121
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022197mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-18346146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ T+eE++l+++++++lG++ W++Ia++++ gRt++++k++w++
  Thhalv10022197m  3 RGNITAEEQLLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 46
                     7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.369152IPR017930Myb domain
SMARTSM007172.1E-16250IPR001005SANT/Myb domain
SuperFamilySSF466897.49E-14355IPR009057Homeodomain-like
PfamPF002498.5E-17346IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-21447IPR009057Homeodomain-like
CDDcd001671.16E-13746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
VRRGNITAEE QLLIIQLHAK LGNRWSKIAK HLPGRTDNEI KNFWRTKIQR HMKVSSSEKM  60
DIRQYCSGNS QSSVMTTMDQ SSSSKALDMA ESLISPVTTT TSSFHVLEQS NDSYWNVEDL  120
WPVQLLNGDH QVI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022197m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408520.22e-95transcription factor MYB57
SwissprotQ9SSA11e-65MYB57_ARATH; Transcription factor MYB57
TrEMBLV4MBZ14e-94V4MBZ1_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006408520.17e-95(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.15e-68myb domain protein 57