PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022200m
Common NameEUTSA_v10022200mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 136aa    MW: 15299.8 Da    PI: 5.0581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022200mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-191263256
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr ++ +g+++AeIrd      ++ +r++lg+f tae+Aa+a+++a+ +++g+
  Thhalv10022200m 12 KYRGVRKRP-WGKYAAEIRD----SaRHgARVWLGTFNTAEDAARAYDRAAFAMRGH 63
                     8********.**********....33236**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.94E-171271No hitNo description
PROSITE profilePS5103223.6961270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-321272IPR001471AP2/ERF domain
PfamPF008472.9E-141263IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-231272IPR016177DNA-binding domain
SMARTSM003802.1E-351276IPR001471AP2/ERF domain
PRINTSPR003671.5E-111324IPR001471AP2/ERF domain
PRINTSPR003671.5E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEHRESNKNE VKYRGVRKRP WGKYAAEIRD SARHGARVWL GTFNTAEDAA RAYDRAAFAM  60
RGHRAILNFP HEYPMMRDGP SGGIVASSSP SEFRGGDGGG ENEVIEFEYL DDSLLEELLE  120
CGESYNQDVW NEANR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-341211414114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00373DAPTransfer from AT3G23220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022200m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256082e-79AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBankAY9741962e-79AY974196.1 Arabidopsis thaliana clone At3g23220 AP2/EREBP transcription factor mRNA, complete cds.
GenBankCP0026862e-79CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406064.12e-96ethylene-responsive transcription factor ERF095
SwissprotQ9LTC64e-44ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBLV4LYD74e-95V4LYD7_EUTSA; Uncharacterized protein
STRINGXP_006406064.17e-96(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.16e-39ERF family protein
Publications ? help Back to Top
  1. Quan R, et al.
    EIN3 and SOS2 synergistically modulate plant salt tolerance.
    Sci Rep, 2017. 7: p. 44637
    [PMID:28300216]