PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022235m
Common NameEUTSA_v10022235mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 240aa    MW: 27578.6 Da    PI: 4.5499
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022235mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-203083356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     k++++t+eq++ Le+ Fek++++  e++++LAkklgL+ rqV vWFqNrRa++k
  Thhalv10022235m 30 KKRRLTTEQVHLLEKSFEKENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 83
                     56789************************************************9 PP
2HD-ZIP_I/II131.14.2e-4229121193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl++eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ ke++ Lr+++++
  Thhalv10022235m  29 EKKRRLTTEQVHLLEKSFEKENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDLLKSTYDQLLSNYDSIVKENDLLRSQMAS 121
                      69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.12E-201787IPR009057Homeodomain-like
PROSITE profilePS5007118.2852585IPR001356Homeobox domain
SMARTSM003891.0E-192889IPR001356Homeobox domain
PfamPF000468.7E-183083IPR001356Homeobox domain
CDDcd000861.35E-183086No hitNo description
Gene3DG3DSA:1.10.10.607.0E-223192IPR009057Homeodomain-like
PRINTSPR000313.3E-65665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000313.3E-66581IPR000047Helix-turn-helix motif
PfamPF021836.8E-1585127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDETSKRRPF FSSPEDLYEE EYYDDQMPEK KRRLTTEQVH LLEKSFEKEN KLEPERKTQL  60
AKKLGLQPRQ VAVWFQNRRA RWKTKQLERD FDLLKSTYDQ LLSNYDSIVK ENDLLRSQMA  120
SLAEKLQAKE EAAIEPPGQV PEPNQLDPLN INRFEPAIKT EDRLSSGSVG SAVLDEDAPQ  180
LLDSCDSYFP IIVPIHSEDD NNYNNPGTAN DRSCFADVFV PTTSPSHDHG ESLGFWGWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17785RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022235m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528540.0AK352854.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-H09.
GenBankAK3535350.0AK353535.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-D05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408508.21e-177homeobox-leucine zipper protein HAT5
SwissprotQ022831e-133HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLE4MWF71e-176E4MWF7_EUTHA; mRNA, clone: RTFL01-08-H09
TrEMBLV4NTB71e-176V4NTB7_EUTSA; Uncharacterized protein
STRINGXP_006408508.11e-177(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-126homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]