PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022305m
Common NameEUTSA_v10022305mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HB-PHD
Protein Properties Length: 675aa    MW: 74823.9 Da    PI: 4.4334
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022305mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.64.9e-145986381353
                      HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      ++L e F++nryp++++re LA++l++t +qV++WF NrR 
  Thhalv10022305m 598 QRLFESFQENRYPDKTTRESLAEELQMTFNQVSNWFRNRRS 638
                      78999***********************************7 PP
2PHD39.21.5e-13254309151
                      SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
              PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                      +C+ Cg+     +++++lCdg C++ fH+ C++++l++e++p +  +wlC+ C++k
  Thhalv10022305m 254 FCAKCGSkdLSLDNDIILCDGfCDRGFHQLCVEPPLRKEDIPPDdeSWLCPGCDCK 309
                      699***965555********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-13244310IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-12248308IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.074252309IPR019787Zinc finger, PHD-finger
PfamPF006284.9E-11254309IPR019787Zinc finger, PHD-finger
SMARTSM002491.4E-9254307IPR001965Zinc finger, PHD-type
CDDcd155042.53E-26254306No hitNo description
PROSITE patternPS013590255306IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003894.0E-10585647IPR001356Homeobox domain
SuperFamilySSF466895.13E-14591642IPR009057Homeodomain-like
CDDcd000867.55E-12597637No hitNo description
Gene3DG3DSA:1.10.10.608.9E-13598646IPR009057Homeodomain-like
PfamPF000462.0E-11598638IPR001356Homeobox domain
PROSITE profilePS5007113.394600643IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MQRATRRRTR SNGGGEVTPT VDKVSEQSNA CVDTQNDGHS HRGVMENGKG RISNGVSGEE  60
QKSTPETGKK RANNKSSGSH RELVLGLPCR GQFEIYRSKK SATSSKKLGG GGKRNVVFSS  120
RSKAQRSKEA TASSSVGANS TPVDGPKKRK KYKKKGKVRE DDEYTRIKKK LRYLLNRINY  180
EQSLIDAYSL EGWKGSSLEK LRPEKELERA TKEILRRKVK IRDLFHHLDT LCAEGSLPES  240
LFDSEGKICS EDIFCAKCGS KDLSLDNDII LCDGFCDRGF HQLCVEPPLR KEDIPPDDES  300
WLCPGCDCKD DSLELLNDSL GTKLSVSDSW EKVFPEAAAA MAGGDQNLHC DLPSDDSDDE  360
EYDPDGLNDN EDDEDGSDDS DDSGNEDGSS DESDFTSASD EMVGSFKDVK DIMNLPSDDS  420
EDDDYDPDAT TRDEDKTQES SNSDCTSDSE APETSLKDDE SNQQDEVTLA NEAISESDAG  480
IDDGLVDVPA RRKVERLDYK KLYDEEYENV ASSSSDDEDW DKTAGKEDSE SADEEDTVPL  540
KQSSEAEDHT STKKPRQKSK RENTKDTLKA PQEAPGENGC SGEKSSSSAC KQTNPRNQRL  600
FESFQENRYP DKTTRESLAE ELQMTFNQVS NWFRNRRSST SKMMVSKEDV EKSRTGKEGE  660
GETSVAGSSE QTLET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150KKRKK
2152169KKKGKVREDDEYTRIKKK
3165171RIKKKLR
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022305m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406494.20.0homeobox protein HAT3.1
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLV4LZJ10.0V4LZJ1_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006406494.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.10.0Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]