PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10022536m

Common Name

EUTSA_v10022536mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 915aa MW: 101281 Da PI: 4.8979

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10022536m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	1e-28	608	658	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Thhalv10022536m 608 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 658 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.234	597	678	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	611	658	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.82E-23	806	901	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.1E-23	814	896	No hit	No description
SMART	SM00666	1.0E-26	816	899	IPR000270	PB1 domain
Pfam	PF00564	4.3E-16	816	898	IPR000270	PB1 domain
PROSITE profile	PS51745	27.63	816	899	IPR000270	PB1 domain
CDD	cd06407	5.70E-42	817	898	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MEDDGGGNGG EGNGGFSPNS SFGAFPETAM DLDFMDELLF DGCWIETTDS KSLKETEEAV 60 LAPNAMNESS PFLCFGENPS QDDFSNQEPF NQAETSSEIA EKFLLEEAEV GRSWWIAPRA 120 NEGPSSSVKK RLLQAISGLN EAVVDKDFLV QIWVPFQQEG KNFLTTWAQP HLFNQEYSSL 180 AKYRHVSENY NFPADEGSKD VGLPGRVFLQ KLPEWTPDVR FFRSDEYPRI KEAQKCDVRG 240 SLALPVFERG SGTCLGVVEI VTTTQKMNYG PELENICKAL EAVDLRSSSY PPSTEVSSDF 300 YNAALPEISD FLASVCRSYD LPLALSWAPC ARNGKGGSRH SDENFSQCVS TIDSACFVLD 360 EQSNDFLKAC SEHHLLQGEG IVGKAFKETK LFFVPEVTTF SKTNYPLAHH AKISGLHAAL 420 AVPLKSKCSG LVEFVLEFFF PKSCLDTEAK QDMLKSLSVT LQQDFRSSNL VIDKDMDLEV 480 VLLVREDMVF SENPLTGAET AESLREIHLQ ESSWISHMIN ANEKGKGVSL SWEYQNEDPK 540 DEFKRSSGWD NNQLEPTPKD FPLEAQQFQQ ASNSGLRVDT GPSTESASTG GNMLGSRRPG 600 EKRRTKTEKT IGLEVLRQYF AGSLKDAAKS IGVCPTTLKR ICRQHGITRW PSRKIKKVGH 660 SLKKLQVVMD SVQGAQGSIQ LDSFYTRFPE LSSPNMSSTG PSLKSNEQLH HLNVSTENGG 720 LAEEKPTPVS PSSSCTKSSG SSTNTVYNAN TLQVAEDAER VLKKAHSEAE LHNGNQEETK 780 CLARNQSHKI FKEPPLPENL PPLPGSSNKS LRAGGTIKVK ATFGEARIRF TLLPSWGYRE 840 LQQEIARRFN IDDISWFDLK YLDDDKEWVL LTCEPDLEEC IDIYRSSQSQ TIKISLQEAS 900 QVKLGGSFGS TGPS*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MEDDGGGNGG EGNGGFSPNS SFGAFPETAM DLDFMDELLF DGCWIETTDS KSLKETEEAV  60
LAPNAMNESS PFLCFGENPS QDDFSNQEPF NQAETSSEIA EKFLLEEAEV GRSWWIAPRA  120
NEGPSSSVKK RLLQAISGLN EAVVDKDFLV QIWVPFQQEG KNFLTTWAQP HLFNQEYSSL  180
AKYRHVSENY NFPADEGSKD VGLPGRVFLQ KLPEWTPDVR FFRSDEYPRI KEAQKCDVRG  240
SLALPVFERG SGTCLGVVEI VTTTQKMNYG PELENICKAL EAVDLRSSSY PPSTEVSSDF  300
YNAALPEISD FLASVCRSYD LPLALSWAPC ARNGKGGSRH SDENFSQCVS TIDSACFVLD  360
EQSNDFLKAC SEHHLLQGEG IVGKAFKETK LFFVPEVTTF SKTNYPLAHH AKISGLHAAL  420
AVPLKSKCSG LVEFVLEFFF PKSCLDTEAK QDMLKSLSVT LQQDFRSSNL VIDKDMDLEV  480
VLLVREDMVF SENPLTGAET AESLREIHLQ ESSWISHMIN ANEKGKGVSL SWEYQNEDPK  540
DEFKRSSGWD NNQLEPTPKD FPLEAQQFQQ ASNSGLRVDT GPSTESASTG GNMLGSRRPG  600
EKRRTKTEKT IGLEVLRQYF AGSLKDAAKS IGVCPTTLKR ICRQHGITRW PSRKIKKVGH  660
SLKKLQVVMD SVQGAQGSIQ LDSFYTRFPE LSSPNMSSTG PSLKSNEQLH HLNVSTENGG  720
LAEEKPTPVS PSSSCTKSSG SSTNTVYNAN TLQVAEDAER VLKKAHSEAE LHNGNQEETK  780
CLARNQSHKI FKEPPLPENL PPLPGSSNKS LRAGGTIKVK ATFGEARIRF TLLPSWGYRE  840
LQQEIARRFN IDDISWFDLK YLDDDKEWVL LTCEPDLEEC IDIYRSSQSQ TIKISLQEAS  900
QVKLGGSFGS TGPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10022536m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006409346.1	0.0	protein NLP1
Refseq	XP_024016455.1	0.0	protein NLP1
Refseq	XP_024016456.1	0.0	protein NLP1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	V4M3L3	0.0	V4M3L3_EUTSA; Uncharacterized protein
STRING	XP_006409346.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10022536m
Entrez Gene	18026281

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]