PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022837m
Common NameEUTSA_v10022837mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family SRS
Protein Properties Length: 227aa    MW: 25004.5 Da    PI: 6.9712
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022837mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702187.93.7e-58642112154
           DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklss 93 
                      rs t+sCqdCGnqakk+C+h+RCRtCCks+g+dC thv+stW+p+akrrerqqq ++++s+ +       +  k  re  ++  ++l+s+    
  Thhalv10022837m  64 RSVTISCQDCGNQAKKGCTHMRCRTCCKSQGLDCPTHVRSTWIPTAKRRERQQQIQTPTSSGNGGGrgGGNILKGYREG-IDLPATLDSSG--- 153
                      67899************************************************99998776655432334444444443.44444444444... PP

           DUF702  94 aeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                           e+  +++Peev+s+a+frcv++s+ dd g+ ++aYqt+v i+GhvfkGiLy+qG+e+
  Thhalv10022837m 154 ----LEMGETTFPEEVNSDALFRCVKMSGADDdGDGQYAYQTTVGIAGHVFKGILYNQGPEN 211
                      ....4566677******************998799*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.6E-5767210IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-2669111IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-26161209IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAGIGSSRKN EEENQQKTNW VWYRNTSHPN TSHNNQQQQI WQQQQSLDLY PGQIDVCDLN  60
TSSRSVTISC QDCGNQAKKG CTHMRCRTCC KSQGLDCPTH VRSTWIPTAK RRERQQQIQT  120
PTSSGNGGGR GGGNILKGYR EGIDLPATLD SSGLEMGETT FPEEVNSDAL FRCVKMSGAD  180
DDGDGQYAYQ TTVGIAGHVF KGILYNQGPE NMSMPGTQFY ENPPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022837m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409194.11e-170protein SHI RELATED SEQUENCE 4
SwissprotQ9SI191e-118SRS4_ARATH; Protein SHI RELATED SEQUENCE 4
TrEMBLV4M6M01e-169V4M6M0_EUTSA; Uncharacterized protein
STRINGXP_006409194.11e-170(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151171519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18120.11e-104SHI-related sequence 4