PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10022845m
Common NameEUTSA_v10022845mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YB
Protein Properties Length: 214aa    MW: 24287.8 Da    PI: 6.0875
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10022845mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.41.6e-5634129297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plkvyl kyre+eg
  Thhalv10022845m  34 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRETEG 127
                      89*******************************************************************************************9 PP

            NF-YB  96 ek 97 
                      ek
  Thhalv10022845m 128 EK 129
                      97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-5527159IPR009072Histone-fold
SuperFamilySSF471133.47E-4136150IPR009072Histone-fold
PfamPF008084.1E-2839103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-186785No hitNo description
PROSITE patternPS0068507086IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-1886104No hitNo description
PRINTSPR006152.3E-18105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTEESPEEDH ESPGVAETNP GSPSSKNNNN NNNKEQDRFL PIANVGRIMK KVLPGNGKIS  60
KDAKETVQEC VSEFISFVTG EASDKCQREK RKTINGDDII WAITTLGFED YVAPLKVYLC  120
KYRETEGEKV NSPKQRQQQQ QPQQQLQQNH FQFQEQDHNS NISCTSYISH HHPSPFLPAD  180
HQPFPNLPFS PKSLQKQFPQ QHENIDSIGQ WSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B9e-4534124292Transcription factor HapC (Eurofung)
4g92_B9e-4534124292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10022845m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409683.11e-158nuclear transcription factor Y subunit B-7
SwissprotQ9SIT91e-122NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLV4NWB61e-157V4NWB6_EUTSA; Uncharacterized protein
STRINGXP_006409683.11e-158(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.11e-117nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]