PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023000m
Common NameEUTSA_v10023000mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 116aa    MW: 13134.3 Da    PI: 8.384
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023000mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.65.3e-3012108197
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +Ca+C + +r+C+++C++a yfp+e + +f+++++lFG++n+++++++++  +r++++ s+++e+ a+++dPv+G +g++++l ++++ ++a l
  Thhalv10023000m  12 PCAVCTTRNRRCSRNCAFAAYFPSELQDEFECANELFGTQNIIRMMRRARVGQRSMLALSIIMEGVAWTHDPVQGGFGMLRRLLWEIRLHDAYL 105
                      7***************************************************************************************999998 PP

           DUF260  95 all 97 
                       +l
  Thhalv10023000m 106 CEL 108
                      776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.14811112IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-2512105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MEAFGDNFRP GPCAVCTTRN RRCSRNCAFA AYFPSELQDE FECANELFGT QNIIRMMRRA  60
RVGQRSMLAL SIIMEGVAWT HDPVQGGFGM LRRLLWEIRL HDAYLCELKG IIKSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023000m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409042.14e-82LOB domain-containing protein 5
SwissprotQ9C8V86e-41LBD5_ARATH; LOB domain-containing protein 5
TrEMBLV4LJ281e-80V4LJ28_EUTSA; Uncharacterized protein
STRINGXP_006409042.12e-81(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36000.14e-34LOB domain-containing protein 5