PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023054m
Common NameEUTSA_v10023054mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 251aa    MW: 28374.6 Da    PI: 10.2017
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023054mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.7e-184821799
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +p +f+++ ++  e s +++++ ++g sW++ +  +k+++  ++ ++GW++Fv++n L e Df++F+++g+++f  +vk+f+k
  Thhalv10023054m  4 AIPYDFMRSVSEH-ELSGKMKIRAQWGSSWDIGI--SKNPRFyFMEKSGWEKFVRENYLGEDDFLTFTHKGKMCF--NVKIFKK 82
                     79*****999654.6778****************..******555569**********************99***..***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.7E-11183IPR003340B3 DNA binding domain
PROSITE profilePS5086313.451183IPR003340B3 DNA binding domain
PfamPF023627.5E-16382IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-16384IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-17483IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-14581No hitNo description
SMARTSM010190.0095158249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-7168246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-8169247IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.725197250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
SQRAIPYDFM RSVSEHELSG KMKIRAQWGS SWDIGISKNP RFYFMEKSGW EKFVRENYLG  60
EDDFLTFTHK GKMCFNVKIF KKDGLEMICP QQSMAFFASS SQVKREGDEV VSPDLGPTAT  120
ETNGEGKFKR KLNSGKKKAK ESESSTMIKE TVSARRDCAG ASSSSSAEFT PIRVSVSRNL  180
MPKQRTTFKI HHPDMKKSWN VVYVPRHEAG GLFSSGWRIL VQEYPVLVGE ACKFTFLKPT  240
ELLLIVSKRA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023054m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024016605.11e-121B3 domain-containing protein At2g35310
SwissprotQ5BPT74e-86Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLV4MEH20.0V4MEH2_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006409470.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.14e-80B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]