PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023106m
Common NameEUTSA_v10023106mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 117aa    MW: 13273.5 Da    PI: 8.1138
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023106mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.64.7e-2912109198
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +Ca+C + +++C+++C +a yfp+e + +f+ + +lFG++n+++++++++  +r++++ ++++e+ a+++dPv+G +g++++l ++++  +a l
  Thhalv10023106m  12 PCAVCTTRNKRCSRNCEFAAYFPSELQDEFESASELFGTQNIIRMMRRARVGQRSMLALCILMEGVAWIHDPVQGGFGMMRRLLWEIKLREAYL 105
                      7****************************************************************************************99998 PP

           DUF260  95 allk 98 
                       +lk
  Thhalv10023106m 106 CELK 109
                      8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.70411112IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-2412107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MEAFGDNFGP GPCAVCTTRN KRCSRNCEFA AYFPSELQDE FESASELFGT QNIIRMMRRA  60
RVGQRSMLAL CILMEGVAWI HDPVQGGFGM MRRLLWEIKL REAYLCELKA IIKSEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023106m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409041.21e-82LOW QUALITY PROTEIN: LOB domain-containing protein 8
SwissprotO821986e-38LBD9_ARATH; LOB domain-containing protein 9
TrEMBLV4M2V35e-81V4M2V3_EUTSA; Uncharacterized protein
STRINGXP_006409041.18e-82(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.13e-40LOB domain-containing protein 9