PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023128m
Common NameEUTSA_v10023128mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 205aa    MW: 23574.4 Da    PI: 10.2876
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023128mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.27.5e-13132184454
                      XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaLkkeleelkk 54 
                      ++r +r++kNRe+A rsR+RK++  ++ eLe +++ L++eN +Lkk+ e+lk 
  Thhalv10023128m 132 DRRHKRMIKNRESAARSRARKQEcaYTNELELEIAHLQKENARLKKQEEQLKM 184
                      799*******************5559********************9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-6129197IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.6131183IPR004827Basic-leucine zipper domain
PfamPF001702.1E-10132184IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.2E-11133183No hitNo description
CDDcd147073.26E-23133189No hitNo description
SuperFamilySSF579591.69E-8133183No hitNo description
PROSITE patternPS000360136151IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
KQKINQSAFS ISSSSSSLSH SHSQAKNMTQ VTMEEVWKEI NLASLHQHRQ LNIDHEPMLR  60
NQNPYNSIFQ DFLNMPLNQQ QPPPSTSSFP LPPPATVLTL NPHSIHTQFE ESAKFGCFGK  120
KRSQDSDESR GDRRHKRMIK NRESAARSRA RKQECAYTNE LELEIAHLQK ENARLKKQEE  180
QLKMAEATQH QTKKTLQRSW TAPF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023128m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409247.21e-150bZIP transcription factor 27
SwissprotQ7PCC63e-90FDP_ARATH; bZIP transcription factor 27
TrEMBLV4LJI61e-149V4LJI6_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006409247.11e-150(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.23e-79basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]