PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023133m
Common NameEUTSA_v10023133mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 517aa    MW: 57014.4 Da    PI: 5.0043
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023133mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.39.9e-991525152374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++     +   + + ts+++ ++++ a k fs +sPi+ fs
  Thhalv10023133m 152 IEDLIRVVDCVESDELQLAQVVLSRLNQRlRSPAGRPLQRAAFYFKEALGSVLSG-----STRNQNRLTSWTEIVQRIRAIKEFSGISPIPLFS 240
                      678*************************99*************************.....5556778888888********************* PP

             GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      h+taNqaIl++++++     H++Df+i+ G+Q+++L++++a+++  +   lR+T+v+s+e  s+ e++ ++e+La+fA+ l+++f+++++++++
  Thhalv10023133m 241 HFTANQAILDSLQQSssPFAHVVDFEIGFGGQYASLMREIAEKSsINGGFLRVTAVVSEE--SAVETRLVKENLAQFAADLKIRFQIEFVLMRT 332
                      **************966678***********************955567*********66..99****************************** PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adh.nsesFlerflealeyysalfdsleakl 275
                      +e+l+++++r+ +gE ++V ++  ++r l       + ++++++ ++++sPkvvv+v++e       +++sF ++f++ le+y+++++sl+a +
  Thhalv10023133m 333 FEMLSFKAIRFVEGERTVVLFSPVIFRRL-------NGISDFVNDLRRVSPKVVVFVDSEgwdG-IsGAGSFQREFVNGLEFYTMVLESLDAAA 418
                      ****************************9.......34567*******************6433.24899************************ PP

             GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                      p+ +  ++ +E+++l+++i  +v ++ ++r++  e  ++Wre++ +aG++p+pls+++  qa++l++k +++g++v +++g+lvl+W++rpLv+
  Thhalv10023133m 419 PTGDLVKKIIEAFVLRPKIAAAVEAAASKRQAGGE--MTWREAFCAAGMRPIPLSQFVDFQAECLVEKAQVRGFHVAKRQGELVLCWHERPLVA 510
                      ****************************9877766..9******************************************************** PP

             GRAS 370 vSaWr 374
                      +SaWr
  Thhalv10023133m 511 TSAWR 515
                      ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.489125495IPR005202Transcription factor GRAS
PfamPF035143.4E-96152515IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MRVSASSDTT NSNSGGRNLA GYNEPTSVLD LRRSPSPAAA EEKPVISAAE ITGGDNQFPL  60
DDHVMRSMDW DSIMKELELD DDSAPNLKSN FLSSAISPHF AVDQQLPGFP DQLHPAEFRS  120
SDVYPGGQGY GFESSNNNNN NEGSVNGGFD FIEDLIRVVD CVESDELQLA QVVLSRLNQR  180
LRSPAGRPLQ RAAFYFKEAL GSVLSGSTRN QNRLTSWTEI VQRIRAIKEF SGISPIPLFS  240
HFTANQAILD SLQQSSSPFA HVVDFEIGFG GQYASLMREI AEKSSINGGF LRVTAVVSEE  300
SAVETRLVKE NLAQFAADLK IRFQIEFVLM RTFEMLSFKA IRFVEGERTV VLFSPVIFRR  360
LNGISDFVND LRRVSPKVVV FVDSEGWDGI SGAGSFQREF VNGLEFYTMV LESLDAAAPT  420
GDLVKKIIEA FVLRPKIAAA VEAAASKRQA GGEMTWREAF CAAGMRPIPL SQFVDFQAEC  480
LVEKAQVRGF HVAKRQGELV LCWHERPLVA TSAWRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2515751425378Protein SCARECROW
5b3h_A2e-2515751424377Protein SCARECROW
5b3h_D2e-2515751424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023133m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409136.10.0scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLV4M3310.0V4M331_EUTSA; Uncharacterized protein
STRINGXP_006409136.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]