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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Thhalv10023133m | ||||||||
| Common Name | EUTSA_v10023133mg | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family | GRAS | ||||||||
| Protein Properties | Length: 517aa MW: 57014.4 Da PI: 5.0043 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 322.3 | 9.9e-99 | 152 | 515 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
+e L++++++v+s++l+laq +L+rl+++ +sp+g+p+qR+a+yf+eAL + l++ + + + ts+++ ++++ a k fs +sPi+ fs
Thhalv10023133m 152 IEDLIRVVDCVESDELQLAQVVLSRLNQRlRSPAGRPLQRAAFYFKEALGSVLSG-----STRNQNRLTSWTEIVQRIRAIKEFSGISPIPLFS 240
678*************************99*************************.....5556778888888********************* PP
GRAS 95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
h+taNqaIl++++++ H++Df+i+ G+Q+++L++++a+++ + lR+T+v+s+e s+ e++ ++e+La+fA+ l+++f+++++++++
Thhalv10023133m 241 HFTANQAILDSLQQSssPFAHVVDFEIGFGGQYASLMREIAEKSsINGGFLRVTAVVSEE--SAVETRLVKENLAQFAADLKIRFQIEFVLMRT 332
**************966678***********************955567*********66..99****************************** PP
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adh.nsesFlerflealeyysalfdsleakl 275
+e+l+++++r+ +gE ++V ++ ++r l + ++++++ ++++sPkvvv+v++e +++sF ++f++ le+y+++++sl+a +
Thhalv10023133m 333 FEMLSFKAIRFVEGERTVVLFSPVIFRRL-------NGISDFVNDLRRVSPKVVVFVDSEgwdG-IsGAGSFQREFVNGLEFYTMVLESLDAAA 418
****************************9.......34567*******************6433.24899************************ PP
GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
p+ + ++ +E+++l+++i +v ++ ++r++ e ++Wre++ +aG++p+pls+++ qa++l++k +++g++v +++g+lvl+W++rpLv+
Thhalv10023133m 419 PTGDLVKKIIEAFVLRPKIAAAVEAAASKRQAGGE--MTWREAFCAAGMRPIPLSQFVDFQAECLVEKAQVRGFHVAKRQGELVLCWHERPLVA 510
****************************9877766..9******************************************************** PP
GRAS 370 vSaWr 374
+SaWr
Thhalv10023133m 511 TSAWR 515
****8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 41.489 | 125 | 495 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 3.4E-96 | 152 | 515 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 517 aa Download sequence Send to blast |
MRVSASSDTT NSNSGGRNLA GYNEPTSVLD LRRSPSPAAA EEKPVISAAE ITGGDNQFPL 60 DDHVMRSMDW DSIMKELELD DDSAPNLKSN FLSSAISPHF AVDQQLPGFP DQLHPAEFRS 120 SDVYPGGQGY GFESSNNNNN NEGSVNGGFD FIEDLIRVVD CVESDELQLA QVVLSRLNQR 180 LRSPAGRPLQ RAAFYFKEAL GSVLSGSTRN QNRLTSWTEI VQRIRAIKEF SGISPIPLFS 240 HFTANQAILD SLQQSSSPFA HVVDFEIGFG GQYASLMREI AEKSSINGGF LRVTAVVSEE 300 SAVETRLVKE NLAQFAADLK IRFQIEFVLM RTFEMLSFKA IRFVEGERTV VLFSPVIFRR 360 LNGISDFVND LRRVSPKVVV FVDSEGWDGI SGAGSFQREF VNGLEFYTMV LESLDAAAPT 420 GDLVKKIIEA FVLRPKIAAA VEAAASKRQA GGEMTWREAF CAAGMRPIPL SQFVDFQAEC 480 LVEKAQVRGF HVAKRQGELV LCWHERPLVA TSAWRF* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 2e-25 | 157 | 514 | 25 | 378 | Protein SCARECROW |
| 5b3h_A | 2e-25 | 157 | 514 | 24 | 377 | Protein SCARECROW |
| 5b3h_D | 2e-25 | 157 | 514 | 24 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Thhalv10023133m |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006409136.1 | 0.0 | scarecrow-like protein 15 | ||||
| Swissprot | O23210 | 0.0 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
| TrEMBL | V4M331 | 0.0 | V4M331_EUTSA; Uncharacterized protein | ||||
| STRING | XP_006409136.1 | 0.0 | (Eutrema salsugineum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4291 | 28 | 57 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 0.0 | GRAS family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Thhalv10023133m |
| Entrez Gene | 18026231 |
| Publications ? help Back to Top | |||
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