PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10023174m
Common NameEUTSA_v10023174mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 340aa    MW: 38700.6 Da    PI: 6.8016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10023174mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05254276123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp+C+ +F ++  +  H+++H
  Thhalv10023174m 254 YTCPKCKGMFETSQKFAAHMSSH 276
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.891254281IPR007087Zinc finger, C2H2
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSPITNIFNS YGNDHRMNHR GFVPIQGNST LRNHNSNVVR SMFTSDHMRH EDLFSSSPLF  60
PSYQNSHVSS SSFGLNNSLY RMRREVDSVS GVDYFPIKDN PQFSQVSFTQ TITNRYSAIV  120
PTNTIVNVQY DIERVKRALD SNTNIWNRPS FHPPTFADNH SEILNPEPLN VVFPHQDSAS  180
RQHLDMFSSL SSMRNNHDQH VPQDGPSLMN SPKPTRVFEE MNGYIDSEED EGSEDDDSYD  240
GRTHSLPYIK YGPYTCPKCK GMFETSQKFA AHMSSHYKTE TTEERGLRIR ARNKNKYRKL  300
ENELLGESQK NKQEDGASSS GVSGDKSLQD LVTVKKELV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10023174m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409144.20.0uncharacterized protein LOC18026238
TrEMBLV4M6H90.0V4M6H9_EUTSA; Uncharacterized protein
STRINGXP_006409144.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-109C2H2-like zinc finger protein